Plant FIBer expression Database

Lus10009796 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26280 657 / 0 CID7 CTC-interacting domain 7 (.1)
AT5G25540 48 / 4e-06 CID6 CTC-interacting domain 6 (.1)
AT5G11440 46 / 1e-05 CID5, IPD1 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038081
[exp]
1079 / 0 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1)
Lus10021960
[exp]
48 / 4e-06 AT5G25540 98 / 3e-26 CTC-interacting domain 6 (.1)
Lus10041253
[exp]
46 / 2e-05 AT5G25540 95 / 6e-25 CTC-interacting domain 6 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G047700
[exp]
737 / 0 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1)
Potri.006G218900
[exp]
728 / 0 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1)
Potri.006G246600
[exp]
43 / 0.0002 AT5G11440 103 / 2e-28 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08590 DUF1771 Domain of unknown function (DUF1771)
PF01713 Smr Smr domain
Representative CDS sequence
>Lus10009796 pacid=23159585 polypeptide=Lus10009796 locus=Lus10009796.g ID=Lus10009796.BGIv1.0 annot-version=v1.0
ATGAGCTCATCCAAGAAGCTATCCCAAAGTATAGATTTTTCAAGCAAGTCTACAGCTTTGAATCCAAATGCCGCGGAGTTCGTTCCATTTTCCCTTAAAT
CATCTGGAAGTACTTCAAATTCCGCAGATGCAGCTCCAACTTCAAGGATTACTACTTCTGGAGCAGCTCTCCATCGATCGGAGTCATCAGTTTCTAATGC
ATCTGATGATGAGGCACATCGGTTCTGGCGTCACCAGCTCCCAGATGATATCACCCCAGACTTTAAGATCACGGGTGAAGATGAATCTCATGGATATGGA
GACATTTCTTTCGCTGGCTTGTCCTTGAATGATGGTGGTGAAGCCTCTAGGTTCTCCACTTTTGCTGGCAGTGGGTATGGTTTTAATGCACAGCGAGAAG
TTTCTCCTCGTCAGGGAAATGGTAGCAGCTTTAGCGACAAGATAAGGCTTGCAGCTTCTTCGTATGTCGAAGATCCAAATGCTGGGTGTCTTTTGCATTC
GCCGACTAAGCCATGGGACAAGCAATTTGTCAACACTGATCAACTTCTTGGCAATGGGAGGGAGATGAATACTTACAGTGAGAACCCCAGACAAAGGTTC
GTCAATGACATTTTAAGCGAACAGGCTTTGATGGATGGGACAGAAATGAATCCTCTAGAGTTTCTTGCTTCTCAGTTCCCTGGCTTTGCCGCAGAAAGCC
TTGCAGAAGTTTATTATGCCAATGGATGCGACCTAAATCTCACTATTGAGATGCTCATTCAGCTAGAGCTTCAGGTCGATGCTGGTTTTAGCCAGAGTAT
GACCTCAAAGACCTTGTCTGCTCCAAATCTCAATGCAATGGACTTTCCAGCTCTTTCTATGCAAGAGAGTCAGAATGCTACATCCAAGTATGCTATAGAT
GATGTCCAACAAAGTACAAATTCATATCAATCTCCTGAGAAGGAGAACATGCTCTTTTTTAAGTCTGGTGCATCCTTTCCTTCAAGAGGTGCAACTGATT
TTGCTTCAGCTGTGAGGAAAATGGCCCTCCAAGATTCCAGTGTGTGGAAATATGAAAGAAATGGTCCTGCTGATTCTACAGTTGGCTCAAGCAGAAGTTC
AAATGTTTTGGCCAGTGCATATAGTAGTGGACAAGGAAGAGGAATGTATGCAGATAGGGTGCATAATCGCAGTTCTTCACGTGCTGCTCCTACCTGGCTT
GAAACTGGTGAAGCAGTAGGACATTTGTATTCTGAGATGCGGGAAGAAGCACGTGATCATGCACGTTTGAGGAATGCGTACTTCGAACAGGCACGCCAAG
CATATCTTATTGGAAATAAAGCGTTGGCAAAGGAATTGAGTGGTAAAGGGCAGCTGCACAATGTGCAGATGAAGGCAGCCCATGGGAAAGCCCAGGATTC
AATCTACCGACAAAGGAATCAAGGTGGAGTGGAGACATATGGAAATGGGAGAGGAAATGAGCGGATGATAGACCTTCATGGTCTGCATGTAAGTGAAGCC
CTGCATGTGCTGAGGCAAGAGTTGGGTGTCCTGAGGAGCACAGCCAGAGCTGCGGATCAGAGATTGCAGGTTTACATATGCGTTGGGACAGGACATCATA
CCAGAGGTACTCGTACCCCTGCACGGCTCCCCGTAGCTGTACAGCGCTATCTGCTCGAAGAGGAGGGTCTTGAATACTCAGAAACACAGCCAGGGCTCCT
AAGGGTAGTGATATACTGA
AA sequence
>Lus10009796 pacid=23159585 polypeptide=Lus10009796 locus=Lus10009796.g ID=Lus10009796.BGIv1.0 annot-version=v1.0
MSSSKKLSQSIDFSSKSTALNPNAAEFVPFSLKSSGSTSNSADAAPTSRITTSGAALHRSESSVSNASDDEAHRFWRHQLPDDITPDFKITGEDESHGYG
DISFAGLSLNDGGEASRFSTFAGSGYGFNAQREVSPRQGNGSSFSDKIRLAASSYVEDPNAGCLLHSPTKPWDKQFVNTDQLLGNGREMNTYSENPRQRF
VNDILSEQALMDGTEMNPLEFLASQFPGFAAESLAEVYYANGCDLNLTIEMLIQLELQVDAGFSQSMTSKTLSAPNLNAMDFPALSMQESQNATSKYAID
DVQQSTNSYQSPEKENMLFFKSGASFPSRGATDFASAVRKMALQDSSVWKYERNGPADSTVGSSRSSNVLASAYSSGQGRGMYADRVHNRSSSRAAPTWL
ETGEAVGHLYSEMREEARDHARLRNAYFEQARQAYLIGNKALAKELSGKGQLHNVQMKAAHGKAQDSIYRQRNQGGVETYGNGRGNERMIDLHGLHVSEA
LHVLRQELGVLRSTARAADQRLQVYICVGTGHHTRGTRTPARLPVAVQRYLLEEEGLEYSETQPGLLRVVIY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26280 CID7 CTC-interacting domain 7 (.1) Lus10009796
[exp]
0 1
AT2G26280 CID7 CTC-interacting domain 7 (.1) Lus10038081
[exp]
1.0 0.9294
AT2G45270 GCP1 glycoprotease 1 (.1) Lus10000791
[exp]
2.4 0.9161
AT4G12010 Disease resistance protein (TI... Lus10019654
[exp]
2.4 0.9080
AT5G62650 Tic22-like family protein (.1) Lus10039294
[exp]
2.8 0.8894
AT5G01260 Carbohydrate-binding-like fold... Lus10004826
[exp]
3.5 0.9071
AT2G06025 Acyl-CoA N-acyltransferases (N... Lus10021559
[exp]
3.5 0.8793
AT1G63900 DAL1 DIAP1-like protein 1, E3 Ubiqu... Lus10027994
[exp]
3.9 0.9059
AT4G32272 Nucleotide/sugar transporter f... Lus10006645
[exp]
4.2 0.8949
AT4G35440 CLCE, ATCLC-E, ... chloride channel E (.1.2) Lus10026573
[exp]
6.6 0.8828
Lus10024539
[exp]
7.9 0.8290

Lus10009796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.