Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26250 797 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G19440 570 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 555 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G26640 550 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 534 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G68530 524 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G01120 521 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 505 / 2e-176 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT5G43760 498 / 3e-173 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G25450 494 / 5e-172 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040796 [exp] 912 / 0 AT2G26250 861 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10016528 [exp] 912 / 0 AT2G26250 866 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10026345 [exp] 573 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 573 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 545 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 545 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002533 [exp] 544 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10030209 [exp] 544 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10028105 [exp] 540 / 0 AT2G26250 607 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218000 [exp] 853 / 0 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.006G080400 [exp] 582 / 0 AT2G26250 575 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.009G116700 [exp] 578 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 568 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 561 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G196200 [exp] 552 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.006G249200 [exp] 546 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 540 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G104300 [exp] 536 / 0 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.010G079500 [exp] 529 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10009799 pacid=23159580 polypeptide=Lus10009799 locus=Lus10009799.g ID=Lus10009799.BGIv1.0 annot-version=v1.0 ATGACTAGATCAGAGAGAGATCTGCTGTCAACAGAGATTGTGAACTGTGGCATAGAATCGTCAGGCCCCAATGCGGGCTCCATGACATTCTCTGTGAGAG TGAGGAGAAGGTTGCCTGACTTCCTCCAGTCAGTGAACCTAAAGTATGTGAAGTTGGGTTACCATTACTTGATAAATCATGCCATCTATTTGGCAACGAT ACCAGTTCTGGTGCTTGTGTTTAGTGCTGAGGTAGGAAGCCTGAGCAGGGAAGAGATATGGAGAAAGGTCTGGGAAGATGCGCGATATGATCTTGCGACT GTGCTTGCCTTCTTTGGTGTTTTAGTCTTCACAATATCTGTCTACTTTATGTCACGCCCAAGGTCTATTTACCTCATTGATTTCGCCTGCTATAAGCCTC ATGACGATCTCAAGGTGAGCAAGGAGGAGTTCATGAACTTGGCCCGCAGGACAGGCAAGTTTGATGAGACAAGCCTTGAATTCCAGAGGAGGATTTTGCA TTCCTCAGGAATTGGAGATGAGACTTACATCCCCAAAGCTGTGATGTGTCAGGAGAAGTGTTCAACAATGAAGGAGGGGAGGGCAGAGGCGTCAATGGTG ATGTTTGGTGCTCTTGATGAGCTGTTTGAGAAAACTGGTATCCGTCCAAAGGACGTTGGTATCCTGGTGGTAAACTGCAGCATCTTTAACCCAACCCCGT CTCTTTCTGCCATGATTATCAATCACTACAGGATGAGAGGTAACATTTTGAGCTACAATCTGGGAGGCATGGGGTGCAGTGCTGGGATTATTGCTATTGA CCTTGCACGTGACATGCTTGAAGCTAACCCAAATAACTATGCTGTGGTGGTTAGTACTGAGATGGTGGGATACAATTGGAGGCGTGACTGCCCACGTTCC AAATATCGTCTTGAACACATTGTCCGAACCCACAAAGGTGCTGATGATCGCAGTTTCAGGTGTATTTACCAAGAGGAAGATGAAGAAAAAAACAAGGGAC TAAAGCTGAGCAAGGAGCTGGTGGAAATAGGAGGAGAAGCCTTAAAAACTAACATCACAACTCTAGGGCCCCTGGTGCTACCATTTTCTGAGCAACTCCT CTTCTTTGCCACCCTCTTGTTTGGAAGCCATAACAAGAAGAAAGGCCAGCTGGCACCTGCAGCAGCAGCATCCTCAAAGCCATACATTCCCAATTACAAC CTGGCATTCGAGCACTTCTGTGTGCATGCATCAAGCAAGACTGTGCTGGATGAACTGCAGAGGAACCTGGAACTGAGTGATAAGAACATCGAAGCATCGA GAATGACTCTGCACAGGTTTGGCAACACGTCGAGTAGTAGCATATGGTACGAGATGGCTTACCTGGAAGCGAAAGAGATGGTGAAGAGAGGGGACATGGT TTGGCAACTGTCTTTTGGTTCAGCATTCAAGTGCAACAGCCTTGTTTGGAAGGCAATGAGACGCTCCAGGAAACCTTTCACCAATCCCTGGCTGGATTGC GTTGACAGATACCCTCTCCAAGATTAG
AA sequence Show only first row Show all	>Lus10009799 pacid=23159580 polypeptide=Lus10009799 locus=Lus10009799.g ID=Lus10009799.BGIv1.0 annot-version=v1.0 MTRSERDLLSTEIVNCGIESSGPNAGSMTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLVLVFSAEVGSLSREEIWRKVWEDARYDLAT VLAFFGVLVFTISVYFMSRPRSIYLIDFACYKPHDDLKVSKEEFMNLARRTGKFDETSLEFQRRILHSSGIGDETYIPKAVMCQEKCSTMKEGRAEASMV MFGALDELFEKTGIRPKDVGILVVNCSIFNPTPSLSAMIINHYRMRGNILSYNLGGMGCSAGIIAIDLARDMLEANPNNYAVVVSTEMVGYNWRRDCPRS KYRLEHIVRTHKGADDRSFRCIYQEEDEEKNKGLKLSKELVEIGGEALKTNITTLGPLVLPFSEQLLFFATLLFGSHNKKKGQLAPAAAASSKPYIPNYN LAFEHFCVHASSKTVLDELQRNLELSDKNIEASRMTLHRFGNTSSSSIWYEMAYLEAKEMVKRGDMVWQLSFGSAFKCNSLVWKAMRRSRKPFTNPWLDC VDRYPLQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	1.4	0.9717
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	2.4	0.9633
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	2.8	0.9648
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10023598 [exp]	3.2	0.9425
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	3.5	0.9522
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	4.0	0.9581
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	4.5	0.9548
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	4.6	0.9514
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	7.1	0.9273
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	7.2	0.9374

Compare expression of checked genes

Lus10009799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.