Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21280 87 / 3e-19 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038083 [exp] 411 / 5e-144 AT5G21280 89 / 9e-20 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217900 [exp] 138 / 5e-37 AT5G21280 87 / 5e-19 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009801 pacid=23159592 polypeptide=Lus10009801 locus=Lus10009801.g ID=Lus10009801.BGIv1.0 annot-version=v1.0 ATGATTTCGGCAGACTCTTCTTCTTCTTCTTCCTCTTGTTCTGCAGTTGCTGTTCATGAAGGCCATAATAGTTATAATAACAATGGTTTGTCGAGGCAGA GTAATAATAGTGCAGCCAAATTAGAAGGAGTAGTCCAACAGCAGCCTCACAAAAAGCAAGTTAGAAGGAGACTCCACACCAGCAGGCCTTACCAAGAGAG GCTTCTCAATATGGCTGAGGCTAGAAGGGAGATTGTTACTGCCCTCAAATATCACAGAGCGGCTATGAAACAGCAACAGCAGCAGCAACAACAAGAAGCA GCCAATGAAGGAGAAGTAGCAAAAAGAAAACAAGAGTCACCGCAACACCAAATTCTTCCACCTCTTGGGAACCCTATGACGTCATACCCTTCCAGCTGCA CCCTAAATTACCCTCCTCATCCCCTGCCTCCTCCTCCTCCTCCTCCATGTTCTAATTATTACCCACCTCCTATTCTTTCACCACCTACTCAACTCAACTT CCCACTCCCAAACCAACCCTTGGGTCTGAACCTCAATCTTGATCAGGATTTCAATAACATACATACTCTTTACCACCACTCTTCTTCATCTTCATCTTCA TGTCCTGCATCATCTTCCTCTTCTCCTCCTTCTCTGATCTCCGTTTCCACTGATGAACAGTATCATCATGAAGGGCTTCAGCTTCCTTCATCCTTATCAT CCGCTGGAGAAAGAGGAGGAGGAGGATTCCATCATGTGCTGGATGCTGAAGAGATGGCAGAGATTAGATCTATTGGAGACCAGCATCAGATGGAATGGAA TGACACCATGAATTTGGTCACCTCCGCTTGGTGGTTCAAGTTCATGAAGACCATGGAGCGTCAGAGTCCCCATGTCCTCAACACAGATCATCATCATCAT CATCATCTATTTGAATTTGATGATAACATCATGGACATCCCTCCCTGGCTCAACCCCAATGATAATGATATTGCCTCCTTACACCATATCAATGATTCTC ATGATCCTGCTTTGCCCTGTATGGACATCGGGGATATAGAAGCAACGGACGGAGAGTGGTGGGCTTGA
AA sequence Show only first row Show all	>Lus10009801 pacid=23159592 polypeptide=Lus10009801 locus=Lus10009801.g ID=Lus10009801.BGIv1.0 annot-version=v1.0 MISADSSSSSSSCSAVAVHEGHNSYNNNGLSRQSNNSAAKLEGVVQQQPHKKQVRRRLHTSRPYQERLLNMAEARREIVTALKYHRAAMKQQQQQQQQEA ANEGEVAKRKQESPQHQILPPLGNPMTSYPSSCTLNYPPHPLPPPPPPPCSNYYPPPILSPPTQLNFPLPNQPLGLNLNLDQDFNNIHTLYHHSSSSSSS CPASSSSSPPSLISVSTDEQYHHEGLQLPSSLSSAGERGGGGFHHVLDAEEMAEIRSIGDQHQMEWNDTMNLVTSAWWFKFMKTMERQSPHVLNTDHHHH HHLFEFDDNIMDIPPWLNPNDNDIASLHHINDSHDPALPCMDIGDIEATDGEWWA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	0	1
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	3.0	0.8416
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	4.9	0.8399
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	5.5	0.8278
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10033799 [exp]	6.5	0.7888
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	9.4	0.7957
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10021803 [exp]	12.4	0.7737
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	13.6	0.8405
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	16.2	0.8314
AT3G26830		CYP71B15, PAD3	PHYTOALEXIN DEFICIENT 3, Cytoc...		Lus10011384 [exp]	16.5	0.7757
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	19.6	0.7489

Compare expression of checked genes

Lus10009801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.