Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43300 2506 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT1G01960 853 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 797 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 772 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 745 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT5G39500 233 / 2e-61 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT1G13980 231 / 8e-61 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G19610 201 / 1e-51 GNL2 GNOM-like 2 (.1) AT5G27970 121 / 3e-27 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038084 [exp] 3218 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10009300 [exp] 889 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 778 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 723 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 667 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 541 / 1e-162 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10026627 [exp] 253 / 8e-68 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 251 / 6e-67 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 246 / 2e-65 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216900 [exp] 2786 / 0 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.002G149200 [exp] 868 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 815 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 814 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 783 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.017G078900 [exp] 252 / 2e-67 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 231 / 7e-61 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 181 / 1e-45 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.013G035100 [exp] 130 / 5e-30 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981) PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10009803 pacid=23159587 polypeptide=Lus10009803 locus=Lus10009803.g ID=Lus10009803.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGGGGTTTCGTCAGCCGGGCATTTGATGCCATTCTAAAGGAATGCGCCGGGAAGAAGTTTCATGATCTTCAAAAATCTATTCAAACTTATC TAGATAATACAAAAGAGATCAATCAGCAACCTAAGGTGGGTGACACCAACGAGACAGAATCATCAGCTGTAGATTCCAGTTCGCATGAGGCAGAAAGTGG AGAAAAATCTGTAGGAAGTACAGAAGAGTCACAGAAGGATCCACAGACATCTGAGGACATGAAGCCTGTCAGAAGCAGTCGAACTGTTTCCGTTGCCTTG GCCAATGCTGGCAACACCTTAGATGGATCTGAAGCAGAACTTGTTTTGAACCCCCTTCGATTGGCGTTCGAGTCAAAGAATTTGAAAATCCTGGAGCCAG CCTTGGATTGCCTACATAAACTCATTGCGTATGACCACTTGGAGGGTGATCCTGGTTTAGATGGTGGAAAAAATTCCTCGTTCTTTACTGACATTCTGAA TATGGTTTGCAATTGTGTTGATAATTCATCTCCTGACAGTACAATTCTGCAAGTGCTTAAGGTACTCTTAACTGCGGTAGCATCCACGAAATTTAGAGTA CATCTGGAGCCTTTGTTAGGAGTTATCAGAATATGCTACAATATAGCACTTCACAGCAAGAGCCCCATCAATCAAGCAACATCAAAGGCGATGCTTACAC AGATGATCAGCATTGTTTTCAAGAGAATGGAAACAGATCCTCAAATCCAAGTTTCCACATCATCGAGTTCTGGAAACCAAGAATCTACTTCAGCTGCACA ATCAGACGTAAAAATTGATGAAAATTCATCTCCAGTCCAAAATGAGGAAGGAATGACTCTAGGGGATGCACTCAATCAGGCAAAAGACACATCTCATGCA TCTGTTGAGGAACTCCAGAATCTTGCGGGTGGAGCTGATATCAAGGGTTTAGAGGCTGTTCTGGACAAGGCTGTGCACATTGAAGATGGAAAAAAGATAA CTCGAGGAATAGATCTTGAAAGTTTGAACATTGGTGAACGTGATGCTTTACTTGTATTTCGCACCCTTTGCAAGATGGGTATGAAAGAAGATAGTGATGA AGTAACAACAAAGACAAGAATTCTTTCTTTGGAGCTTCTACAGGGCCTATTGGAAGGAGTTAGTGATTCATTTTTGAAAAATATCCATTTTATTGATTCA GTGAAGGCATATCTTTCATATGCTCTGTTACGAGCATCAGTGTCACAATCACCTGTGATATTCCAGTATGCAACTGGAATCTTCTCTGTGCTTTTGCTGC GGTTCCGAGAGAGTCTTAAAGGTGAAGTTGGCGTCTTCTTTCCGTTGATAGTCTTACGTTCACTGGATGGCCCTGAATCTAATGTTAACCAGAAAACAAG TGTTCTCAGGATGCTCGAGAAGGTCTGCAAGAATTCTCAAATGCTTGTTGATGTTTATGTGAATTATGACTGTGATCTTGAAGCACCCAACTTGTTCGAA AGAATGGTGACTGCTCTGTCAAAACTAGCTCAAGGGACTCAAAGTACAGACCCAAGTACGGTTGCTATGGCTCAGACGACTTTACTCAAAGGTTCATCGC TGCAGTGTCTAGTAAATGTACTTAAATCACTGTTTGACTGGGAAAAAGCATGCCGAGAACATAAGAAAAGTAGAAAGGTTCAGGCAGCTCAAGAAGAGCT TTCAGATGAAGTTTTTATTGATACAAGAAATAAGGAAGAGGCCAATGGCTTTGAGAAAGCCAAAGCTCATAAATCTACAATGGAAGCTGCCATCTCCGAG TTCAATAGGAAACCATCAAAGGGAATAGAATATTTGATAGCCAATAAGTTAGTGGAAAGTAAGCCTGCTTCAGTTGCGCAGTTCCTCAGGAACACTCCTA CCTTGAATAAGGCTATGGTGGGAGACTACTTGGGCCAACATGAGGAGTTTCCCCTTGCTGTTATGCATGCTTATGTCGATGCAATGAGCTTTTCTGGAAT GAAGTTTCATGCAGCAATTCGCGAGTTTCTGAAAAGCTTCAGACTGCCAGGAGAAGCTCAGAAAATTGATCGCATTATGGAGAAATTTGCTGAAAGATAT TGTGCTGACAACCCAGGTCTTCTAAAAAATCCAGATACTGCTTATGTTCTTGCATATGCAGTTATAATGTTGAATACCGATGCACATAATCCAATGGTGT GGCCTAAAATGTCAAAGTCAGATTTCGTAAGGAACAATGTCATGGATAATGCAGAAGATTGTGCACCAGCAGATTTGCTGGAAGAGATTTATGATTCTAT TGTGAAGGACGAGATTAAACTGAAAGATGAAGCAGATGCTATTGAGAAAAGCAAACACAAACAAGAAGGTGAAGAGAGAGGCCGCCTTGTGAATATTCTA AATCTGGGCATCCCGAAAAAAAAATCATCTAACGATGTTAAGTCTGAAAGCGAAGCAATCATTAGGCGGACACAGGCATTTTTCCGGAAGCAAGGGGCAC GAAGGGGAATTTTTCATACAGTTAAACAGATTGAAATTGTAAGGCCTATTGTTGAAGCAGTAGGGTGGCCTTTGCTTGCTACCTTCTCCGTGATTATGGA GGAAGCAGAAAATAAACCAAGAGTTGTTGCCTGTATGGAGGGGTTTAAAGCTATAATATGCATCACATATGTTCTTGGAATGGATACCATGCGCTATGCT TTCCTAACGTCCCTAATCCGGTTTACTTTCTTGCATGCCCCAAGGGACATGCGCAGTAAAAATGTCGAAGCATTACGTACACTGCTTTCATTGTGCGACT CAGAAGCTGATTCCTTCCAAGACACATGGAATGCAGTTCTGGAGTGCATCTCTCGCCTTGAATATATCACTTCCACACCTGCTATTGCTGCCAGTGTGAT GCAGGGGTCAAATCAGATTTCTAAGGACGCTGTTCTTTCCTCCCTAAAAGAGCTGGCTGGGAAGCCCACTGAACAAGTTTTCATAAATAGTGTTAGATTG CCTGGTACTTCCATAACAGAGTTCTTCACTGCTCTTTGTGGTGTCTCAGTTGAAGAGCTAAAGCAGACACCTGCTCGAGTATTCAGCTTGCAGAAGCTTG TTGAGATCAGCTATTACAACATGTCTCGGATCCGTATGGTCTGGGCTAAAATATGGTCTGTCCTAGCAAATCATTTTATTTTTGCTGGGAGCCATCAGGA GGAAAAAGTTGCTATGTATGCTATAGATTCTCTGCGACAGCTTGGTATGAAGTATCTGGAACGTGATGAACTTTCAAATTTCACTTTCCAGAATGACATT CTGAAACCATTTGTTGTTCTTATGCGCAATAGTCGAAGCGAATCCATACGAAGCTTAATTGTTGACTGCATTGTGCAGATGATAAAATCTAAAGTGGGAA GTATAAAGTCAGGATGGCATAGTGTTTTCATGATCTTTACAGCTGCCGCAGATGATGAACAGGAGTCTATTGTTGAAAGGGCATTTGAAAATGTTGAACA AGTTATTTTGGAGCACTTCGATCAGGTTGTTGGAGATTGCTTTATGGACTGCGTGAACAGTCTTATTAGATTTGCAAATAACAAAACCTCTCATCGTATA AGTTTGAAGGCGATTGCACTTCTCCGCATTTGTGAAGATCGGTTAGCAGAGGGTCTCATTCCTGGTGGTGCTTTGAAGCCCATTGATGCTGATGCAACAT TTGATGTAACTGAGCACTATTGGTTCCAGATGCTGGCTGGTTTGTCTGACTTAACACTGGATCAAAGACCTGAAGTCAGAAGTTGTGCTTTAGAGGTTCT ATTTGATTTACTGAATGAGAGAGGTAGCAAGTTTTCAACATCATTTTGGGAAAGCATTTTCCACCGGGTCCTATTTCCCATCTTTGACCACGTGAGGCAT GCGGGAAAAGAGAGTTTGTTCTCCTCGGAGGATGAATGGTTTAGGGAAACCAGCATTCATTCCCTTCAGCTTCTGTGCAACCTTTTCAACATATTCTACA AGGAGGTTTGTTTCATGCTTCCACCACTTTTGAGCTTGCTTCTGGACTGTGCAAAGAAGACCGACCAGACTGTTGTATCCATTTCTTTGGGTGCATTGGT GCATCTCATAGAAGTTGGAGGTCATCAGTTTAGTGAGAGTGATTGGGATACATTATTAAAAAGCATAAGGGATGCTTCATACACTACCCAGCCGCTTGAG CTACTTAATGCTGTCGGGTTGGACAACTCAAAAGGCCCAGTAGTGAGAGCTAATCTGGAGGCTGACACAAGAGATGATTCGGCCAACAATCAGCCTGATG CCAGTGAGAGTGTTAGGGGAACTCCTTTGCCATCCCCAAAGATAGCTCATAGTTCAGGCATTAATGCCAAGCCGTCAGTGTTCCTCAATCAGAGTCAAGA GCCAGGAACACAAAATAACGTGGATGGATCAGAGGGTATTCCATCGCCATCAGGAAGAGCTCAGAAACCTGAAACCTTGCCGCGTACTCAAACTCTAGGC CAAAAAATTATGGGAAATGTGATGGATAATCTTTTCCTCCGTAATCTTACCTCTAAATCCAAGTCTCCTTCTGATGCCTCTGCACCATCTTCTCCAGTTA AGGTTCTTGATGCTGCGGGGCCCGATACAAAAGATGAAGAAGAAAGTCCACTGATGGCTGCCATTAGGGGCAAGTGCATCACTCAGTTATTGCTTCTTGG AGCTATTGATGGTATACAGAAAAAGTACTGGAGCAAGTTGGTGGCTCAGCAAAAGGTTGCTATAATGGATGTTCTGTTATCTATATTAGAATTTGCTGCT TCATACAATTCATATACCAGCCTCAGAATGCGTCTGCACCATGTTCCTGATGAAAGGCCTCCTCTCAATCTCCTTCGACAAGAACTAGTAGGTACTAGTG TGTATCTGGATGTTCTACAGAAAACTACTTCAGATTTTGACGCAAACAAGGAGCAGAAAGTGGAATCGAAAGCAAACAATGGTTCAAGTCCAACGGGACA ACTAGAAGGGATTGCGGAGGAAAAATTGGTTTCATTTTGTGAGCAGGTACTCCGGGATGCATCTGAGCTTCAGTCCGGTGTAGGAGAAACGACGAATATG GATATCCATCGAGTGCTGGAGTTACGTTCACCAATCATTGTTCGGGTGCTTGAAGGAATGTGTTACATGAACAGCCAAATCTTTAAGAGACACATAAGAG AGTTCTATCCGTTGCTGACAAAGCTTGTTTGTTGTGATCAGTTGGGTGTACGAGGTGCGCTTGGTGATCTATTCAGGATGCAATTGAAAGCTCTGGTGCC GCCCTAG
AA sequence Show only first row Show all	>Lus10009803 pacid=23159587 polypeptide=Lus10009803 locus=Lus10009803.g ID=Lus10009803.BGIv1.0 annot-version=v1.0 MAAGGFVSRAFDAILKECAGKKFHDLQKSIQTYLDNTKEINQQPKVGDTNETESSAVDSSSHEAESGEKSVGSTEESQKDPQTSEDMKPVRSSRTVSVAL ANAGNTLDGSEAELVLNPLRLAFESKNLKILEPALDCLHKLIAYDHLEGDPGLDGGKNSSFFTDILNMVCNCVDNSSPDSTILQVLKVLLTAVASTKFRV HLEPLLGVIRICYNIALHSKSPINQATSKAMLTQMISIVFKRMETDPQIQVSTSSSSGNQESTSAAQSDVKIDENSSPVQNEEGMTLGDALNQAKDTSHA SVEELQNLAGGADIKGLEAVLDKAVHIEDGKKITRGIDLESLNIGERDALLVFRTLCKMGMKEDSDEVTTKTRILSLELLQGLLEGVSDSFLKNIHFIDS VKAYLSYALLRASVSQSPVIFQYATGIFSVLLLRFRESLKGEVGVFFPLIVLRSLDGPESNVNQKTSVLRMLEKVCKNSQMLVDVYVNYDCDLEAPNLFE RMVTALSKLAQGTQSTDPSTVAMAQTTLLKGSSLQCLVNVLKSLFDWEKACREHKKSRKVQAAQEELSDEVFIDTRNKEEANGFEKAKAHKSTMEAAISE FNRKPSKGIEYLIANKLVESKPASVAQFLRNTPTLNKAMVGDYLGQHEEFPLAVMHAYVDAMSFSGMKFHAAIREFLKSFRLPGEAQKIDRIMEKFAERY CADNPGLLKNPDTAYVLAYAVIMLNTDAHNPMVWPKMSKSDFVRNNVMDNAEDCAPADLLEEIYDSIVKDEIKLKDEADAIEKSKHKQEGEERGRLVNIL NLGIPKKKSSNDVKSESEAIIRRTQAFFRKQGARRGIFHTVKQIEIVRPIVEAVGWPLLATFSVIMEEAENKPRVVACMEGFKAIICITYVLGMDTMRYA FLTSLIRFTFLHAPRDMRSKNVEALRTLLSLCDSEADSFQDTWNAVLECISRLEYITSTPAIAASVMQGSNQISKDAVLSSLKELAGKPTEQVFINSVRL PGTSITEFFTALCGVSVEELKQTPARVFSLQKLVEISYYNMSRIRMVWAKIWSVLANHFIFAGSHQEEKVAMYAIDSLRQLGMKYLERDELSNFTFQNDI LKPFVVLMRNSRSESIRSLIVDCIVQMIKSKVGSIKSGWHSVFMIFTAAADDEQESIVERAFENVEQVILEHFDQVVGDCFMDCVNSLIRFANNKTSHRI SLKAIALLRICEDRLAEGLIPGGALKPIDADATFDVTEHYWFQMLAGLSDLTLDQRPEVRSCALEVLFDLLNERGSKFSTSFWESIFHRVLFPIFDHVRH AGKESLFSSEDEWFRETSIHSLQLLCNLFNIFYKEVCFMLPPLLSLLLDCAKKTDQTVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASYTTQPLE LLNAVGLDNSKGPVVRANLEADTRDDSANNQPDASESVRGTPLPSPKIAHSSGINAKPSVFLNQSQEPGTQNNVDGSEGIPSPSGRAQKPETLPRTQTLG QKIMGNVMDNLFLRNLTSKSKSPSDASAPSSPVKVLDAAGPDTKDEEESPLMAAIRGKCITQLLLLGAIDGIQKKYWSKLVAQQKVAIMDVLLSILEFAA SYNSYTSLRMRLHHVPDERPPLNLLRQELVGTSVYLDVLQKTTSDFDANKEQKVESKANNGSSPTGQLEGIAEEKLVSFCEQVLRDASELQSGVGETTNM DIHRVLELRSPIIVRVLEGMCYMNSQIFKRHIREFYPLLTKLVCCDQLGVRGALGDLFRMQLKALVPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	0	1
AT4G39420			unknown protein		Lus10005786 [exp]	1.0	0.9731
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	1.4	0.9710
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	2.0	0.9684
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	2.8	0.9588
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	3.5	0.9698
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	4.9	0.9640
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Lus10022757 [exp]	5.3	0.9299
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	5.9	0.9616
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	6.3	0.9649
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	6.6	0.9399

Compare expression of checked genes

Lus10009803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.