Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009807 pacid=23159581 polypeptide=Lus10009807 locus=Lus10009807.g ID=Lus10009807.BGIv1.0 annot-version=v1.0 ATGGCCACCGTCCCTTCATCTCCTCCTCTTATCTGGTTCGACGAAGCTCATCCTCTGGGTTCTGGAGACAAACGATGCTCGATTGAGGCACCTCCGGCGG TGATAGCGACAACAAATTTCTCCTCGCCCTCCTCCGATGGTGGCAGATCGAACCTCCTCCCTTCAGAGCCTGGATGGCTATCGGAACCGACGTACACCAA CCAGGGATATGGTCGAGGTCAAACTGAGAAAGTGGGGTCTAAAAGACGAAGGGGCATTGGTTTAACGACGGCTAAAGGGCACGGGGAGGGACCTAAATCG GCCAACTTCCCAGGAACCGGCTACTACACATACGGACTCCTCAAGATATTGACAAGAACCCTTTTTAACGTGACACCTGATTCTAGTGCAGTACTCAGTA CTCAAACATACCCTTCTTGGCTGTGA
AA sequence Show only first row Show all	>Lus10009807 pacid=23159581 polypeptide=Lus10009807 locus=Lus10009807.g ID=Lus10009807.BGIv1.0 annot-version=v1.0 MATVPSSPPLIWFDEAHPLGSGDKRCSIEAPPAVIATTNFSSPSSDGGRSNLLPSEPGWLSEPTYTNQGYGRGQTEKVGSKRRRGIGLTTAKGHGEGPKS ANFPGTGYYTYGLLKILTRTLFNVTPDSSAVLSTQTYPSWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009807 [exp]	0	1
AT1G68190	CO		B-box zinc finger family prote...		Lus10035257 [exp]	1.4	0.7813
AT5G62650			Tic22-like family protein (.1)		Lus10010502 [exp]	2.2	0.7348
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	2.4	0.7669
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	6.3	0.7478
AT1G17665			unknown protein		Lus10003829 [exp]	7.2	0.6946
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	7.7	0.7756
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	10.7	0.6642
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	11.9	0.6393
AT1G68190	CO		B-box zinc finger family prote...		Lus10034625 [exp]	14.5	0.7154
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	15.1	0.6948

Compare expression of checked genes

Lus10009807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.