Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33150 525 / 6e-173 LKR/SDH, SDH lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038086 [exp] 681 / 0 AT4G33150 1445 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134300 [exp] 550 / 0 AT4G33150 1521 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3) Potri.006G134450 [exp] 316 / 9e-103 AT4G33150 385 / 4e-127 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04455 [flax] [poplar] Saccharop_dh_N LOR/SDH bifunctional enzyme conserved region CL0325 [flax] [poplar] Form_Glyc_dh PF05222 [flax] [poplar] AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03435 [flax] [poplar] Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain CL0063 [flax] [poplar] NADP_Rossmann PF01262 [flax] [poplar] AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009808 pacid=23159593 polypeptide=Lus10009808 locus=Lus10009808.g ID=Lus10009808.BGIv1.0 annot-version=v1.0 ATGTTGGGGAATGGAGTAATTGGGATATTGGGGGAATCGGTGAACAAGTGGGAGAGAAGGGCACCGCTGACCCCATCACACTGCGCACGCCTTCTTCACA GTGGGGTGGCTCGCATCATTGTGCAGCCTTCAACCAAGCGAATTCACCATGATGCATTGTACCAAGAAGTCGGCTGCCATATATCTGAAGATCTCTCTGA ATGCGGACTCATTGTTGGCATTAAACAACCCAAGTTGGAGATGATCCTTCCTGATCGAGCTTATGCGTTCTTTTCTCACACACACAAAGCTCAGAAAGAA AACATGCCTTTACTCGACAAGATTCTAGCTGAAAGGGTAACACTGTACGATTACGAGCTTATTGTGAAGCCTGATACCGGGAAAAGGAAGCTCGCTTTTG GAAATTATGCTGGCAGAGCCGGACTTGTCGATTTCTTGCATGGCTTAGGGCACAGGTATCTGAGCCTGGGGTATTCCACTCCCTTCCTTTCACTGGGTGC ATCTTATATGTATTCTTCATTGGCTGCTGCTAAAGCTGCTGTCATTTCTGTTGCTGAAGAAATTTCTACTCTTGGATTGCCTTCTGGAATCTGTCCTTTG GTTTTCGTTTTCACTGGCTCCGGAAATGTTTCTTTAGGCGCCCAAGAAATTTTTAAGCTCCTTCCCCACAAATTTGTTGACCCTAGCCAGCTTCCACTAC TCTTTTCACAAGCAAAGGACAATGGTACTCCAACAAAGGCTGCCAAGAGACATTTTCATGTCTATGGTTGTGTCGTCACTTCCCAGGACATGGTCCAACA CATTGATCCTTCCAAACTATTTGATAAAGTAGATTATTATGCACATCCAGAACACTACCAACCAGTTTTCCATGAAAGGATAGCCCCATATGCATCTGTT ATAGTCAATTGCATGTACTGGGAAAAAAGATTTCCTCGGCTGTTGAGCACTCAACGAGTTCAAGAGCTAATGAGAAACCACTGCCCACTAGTTGGTGTGG CTGATATTACCTGTGACATCGGCGGCTCGTTACAAGAAATACAAGAAAGTTCAACAAATTCAAACTCTGGCAGGAAGAATTTCAATATATCGGTATCTCT TAGTGGTCACTTATTCGATAAATTCCTCATAAATGATGCATTGGATATCATTGAAGAGGCAGGTGATATCATTGAAGCGGAAGGTGGCTCCTTCCGCTTG GTTAAATGTCAAGTTGGTCAAAGTACCCAGGAAGCATCCTTCTCTGAACTGCTAGTTGAGGCCAATGACAGAGCAGTTCTCGACCAGATTATAGATTCTT TGACGTCTCTTGCTAATCGAGATAAACATCAAGGAGATGTGGGAAGCCAAGAACATAATATTTCTCTCAGAGTTGGTGAGATCCAGGAGAATGGCTACAA GAAGGAATGTAATGGAACAATAAAACGTTCAGTTCTTATTATTGGCGCTGGCCGAGTATGTCGACCAGCTGCCGAGTTCTTAGTATCAGTTGGGAGCAAT GCAGCCTCCAGTTGGTATCAAACATGTCTGGATTCTGATGAAAGAAATGATATTGAAGTTATTGTCGCATCCCTCCTCATAAAAGATGCACAAGAGATCA CTGAGGGTATTCCTAATGCCACAGCAGTTCAACTTGATTTGTCAGATCATGAAAGCCTTTCCAAGTTCATCTCGGAGGCTGAGGTCGTTATTAGCTTAGT GCCTGCTAGTTTTCATGTAATTGTAGCAAAAGAGTGCATAAAGCTGAAGAAGCACCTTGTTACTGCTAGCTATGTTGATGATTCAATGTCATCATTGGAT ACAAAAGCGAAGGCTGCTGGTGTCGCCATCCTTGGGGAGATGGGACTGGATCCTGGAATTGATCATATGATGGCAATGAAGATGATCAATGAAGCTCGTA TGCGTAACGGGAGAATAAAGTCTTTTACCTCTTACTGTGGAGGACTTCCTTCCCCAGCTGCTGCGAATAACCCTTTGGCTTATAAGTTCAGTTGGAGCCC TGCAGGAGCCATTCGAGCAGGGCGCAATCCTGCCACCTACAGATCTAATGGTGAAATTATACAAGTTGCTGGTGATGATCTCTATGATTCAGCTGCTCGT TTCAGGATTCCAGACCTCCCTGCCTTTTCCTTGGAATGCCTTCCTAACCGTGACTCTCTCGTTTACGGGAAGCTATATGGAATCCAAGATGAAGCTTCAA CCATCTTTCGTGGAACCCTACGCTATGAAGGCACGAGATATATATAG
AA sequence Show only first row Show all	>Lus10009808 pacid=23159593 polypeptide=Lus10009808 locus=Lus10009808.g ID=Lus10009808.BGIv1.0 annot-version=v1.0 MLGNGVIGILGESVNKWERRAPLTPSHCARLLHSGVARIIVQPSTKRIHHDALYQEVGCHISEDLSECGLIVGIKQPKLEMILPDRAYAFFSHTHKAQKE NMPLLDKILAERVTLYDYELIVKPDTGKRKLAFGNYAGRAGLVDFLHGLGHRYLSLGYSTPFLSLGASYMYSSLAAAKAAVISVAEEISTLGLPSGICPL VFVFTGSGNVSLGAQEIFKLLPHKFVDPSQLPLLFSQAKDNGTPTKAAKRHFHVYGCVVTSQDMVQHIDPSKLFDKVDYYAHPEHYQPVFHERIAPYASV IVNCMYWEKRFPRLLSTQRVQELMRNHCPLVGVADITCDIGGSLQEIQESSTNSNSGRKNFNISVSLSGHLFDKFLINDALDIIEEAGDIIEAEGGSFRL VKCQVGQSTQEASFSELLVEANDRAVLDQIIDSLTSLANRDKHQGDVGSQEHNISLRVGEIQENGYKKECNGTIKRSVLIIGAGRVCRPAAEFLVSVGSN AASSWYQTCLDSDERNDIEVIVASLLIKDAQEITEGIPNATAVQLDLSDHESLSKFISEAEVVISLVPASFHVIVAKECIKLKKHLVTASYVDDSMSSLD TKAKAAGVAILGEMGLDPGIDHMMAMKMINEARMRNGRIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRAGRNPATYRSNGEIIQVAGDDLYDSAAR FRIPDLPAFSLECLPNRDSLVYGKLYGIQDEASTIFRGTLRYEGTRYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	0	1
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	3.9	0.9714
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	4.4	0.9753
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	4.7	0.9748
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	5.5	0.9707
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	5.8	0.9617
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10032952 [exp]	6.0	0.9616
AT1G19530			unknown protein		Lus10002540 [exp]	6.5	0.9704
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	7.3	0.9683
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	7.7	0.9709
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	7.9	0.9552

Compare expression of checked genes

Lus10009808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.