Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01350 443 / 4e-157 C3HZnF Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1) AT5G06420 442 / 5e-156 C3HZnF Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) AT4G01023 97 / 2e-23 RING/U-box superfamily protein (.1) AT2G23780 45 / 3e-05 RING/U-box superfamily protein (.1) AT3G07200 42 / 0.0002 RING/U-box superfamily protein (.1.2) AT1G74990 41 / 0.0002 RING/U-box superfamily protein (.1) AT2G42030 42 / 0.0004 RING/U-box superfamily protein (.1) AT5G48655 41 / 0.0004 RING/U-box superfamily protein (.1.2.3) AT1G19310 41 / 0.0005 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040914 [exp] 575 / 0 AT1G01350 469 / 2e-167 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1) Lus10016796 [exp] 45 / 3e-05 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 45 / 4e-05 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10030044 [exp] 42 / 0.0005 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10010791 [exp] 41 / 0.0008 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 41 / 0.0008 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097300 [exp] 448 / 3e-159 AT1G01350 449 / 2e-159 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1) Potri.014G154600 [exp] 45 / 5e-05 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.005G127900 [exp] 44 / 5e-05 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 42 / 0.0002 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 42 / 0.0003 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.006G035700 [exp] 42 / 0.0007 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10009810 pacid=23180165 polypeptide=Lus10009810 locus=Lus10009810.g ID=Lus10009810.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAGGAGATTCTCAGAAGCCTGAACAAGTATGCAACTTTTTTAGAAAGCCATCTAAGAACAAAAACATAAGGAAGAGAGCTATTGTGGAAG ATGACGCGGAGGATTCAAATACTGAAAGCTCTGTGCTGAACAATCAGAAGAAGGTGCCAAAGGCTGATAATAAGTTGTACTTCTCGACTGGACCCTCCAA GAGCTCAAAGTCATCTGAGCCTGACTCTGACAGTGCGAAGTCCATCTTTCAGTTCGAGTCATCAAAGGAAATCCAAGTACAAAATGACAATAGAGCAACT GCAACTTTAGAAACTGAGACAGACTTCTCAAGAGACGCCCGAGCAATACGTGAAAGAGCTCTTAAGCAAGCAGAGGACGGTTTGAATAGTAAGAAGCCAA GTTCTAGCAACGAGAAGCTGTATAAAGGGGCTCATGGATATACAGATCACAAGGCTGGATTTAGAAGAGAGCAAACAATTGCAAGTGAGAAAGCCGGTGG ATCACATGGCCCTCTTAGAGCATCTGCACACATCAGGGTCTCAGCAAGGTTTGATTACCAGCCAGATATATGTAAAGATTACAAAGAAACTGGTTATTGT GGTTATGGAGATTCGTGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGATGGCAGATGGAGAAGGAGTGGGAAGAAATAGAGAAGGCAAGGAAGA GGAGATTAGCTATGGGTGGTGGTGATGAGGAAGGACAGCTTCTTGAAGCTGAAGCTGATGACGACGATGAAGATGAGGATGCCTTACCATTTGCATGCTT CATTTGTAGAGAGCCTTTTGAAGATCCTGTTATGACAAAATGCAAGCATTACTTCTGTGAACATTGTGCTCTAAAGCATCACTCCAAAAACAAGAAATGC TTTGTCTGCAACAAGCCAACTCTTGGCATTTTCAACACTGCCCATGAAATACGCAAAAGGAGTGCAGAGGCGGGTAAATAG
AA sequence Show only first row Show all	>Lus10009810 pacid=23180165 polypeptide=Lus10009810 locus=Lus10009810.g ID=Lus10009810.BGIv1.0 annot-version=v1.0 MAESGDSQKPEQVCNFFRKPSKNKNIRKRAIVEDDAEDSNTESSVLNNQKKVPKADNKLYFSTGPSKSSKSSEPDSDSAKSIFQFESSKEIQVQNDNRAT ATLETETDFSRDARAIRERALKQAEDGLNSKKPSSSNEKLYKGAHGYTDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYC GYGDSCKFMHDRGDYKSGWQMEKEWEEIEKARKRRLAMGGGDEEGQLLEAEADDDDEDEDALPFACFICREPFEDPVMTKCKHYFCEHCALKHHSKNKKC FVCNKPTLGIFNTAHEIRKRSAEAGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	0	1
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	1.7	0.9194
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10040914 [exp]	2.4	0.9101
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	3.6	0.8815
AT5G26990			Drought-responsive family prot...		Lus10031467 [exp]	4.9	0.9127
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	6.9	0.9089
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	7.7	0.8772
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	9.1	0.8547
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	9.9	0.8856
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	10.7	0.9025
AT3G16640		TCTP	translationally controlled tum...		Lus10002877 [exp]	11.5	0.8846

Compare expression of checked genes

Lus10009810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.