Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61680 519 / 7e-177 alpha/beta-Hydrolases superfamily protein (.1) AT1G02660 389 / 1e-125 alpha/beta-Hydrolases superfamily protein (.1) AT3G62590 352 / 4e-112 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040915 [exp] 524 / 1e-180 AT3G61680 415 / 1e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10010031 [exp] 372 / 6e-119 AT1G02660 702 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036334 [exp] 362 / 2e-115 AT1G02660 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097200 [exp] 706 / 0 AT3G61680 580 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G169600 [exp] 692 / 0 AT3G61680 576 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G197900 [exp] 376 / 2e-120 AT1G02660 561 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10009811 pacid=23180205 polypeptide=Lus10009811 locus=Lus10009811.g ID=Lus10009811.BGIv1.0 annot-version=v1.0 ATGGCATGCAGTTCAGTGACCATGCCTGCGTCTCCAACTACGACACAATTCGGCAGCGATCTTCTTCGTTCGGACTCCAGCAAGGATTTAACGAATCAAG CTAACATGAGGAGGTGCTATTCCGACGGTCACCTCTGCAAATCTCTGAACTGCTTAGCTGTATCGGCAGTCCAGCCGAAGCTGAAGACCAGCCGTTCGTT TGGGTTCCCGTTCCAAATTGCCGGATCGTTCATACCACGCTCCGTTCGAACGCTTTTGTTTGATCCTGAGACGAGCAGGATGACTAGCATGGAGTATAAG GAACTGGGAAATGAAGTTGGCAGTTCTGATAAGGGCAGCGAGTTCGGGGAAGATGAGGAAGTTAAGAGAACGAATTGGATGGAAAGGCTCTTGGAGATCA GGAGCCATTGGAGGAATCGACATCCGAAAGATGACATGGGCGAAGGATCATATATGGATGAAGCTGGTGATTGCTATGGTGATGGTGACGAAGATGGATG TTTGGCTGATTACGACTCGGAGGAAGAAGAAGAGTTTGATTGTGAGATGTTCTACCGACTTTTGAAGCGGGTTCCTTGGTCCGATACTAAGCTCTTCTCC AGATTGGCTTTCTTGTGCAACATGGCTTATGTTATATCAGACATTAAGGCTAATGATCTGAAACGACACTATGGACTCCATTTTGTGACATCTTCTCTGG AAAAGAAAGCAGAACTAGCAGCCATAAAAGCAAAGCTCGAGGAGGATTCTAATTGTGTACCTGCAATTGCTGGGTTCACAGGAGAGCTAGCTGAGGACCC AGATCAGAAACGTCCAGTCTGCCCAGAAGTTGCCTATGGGATTGCCGCTTCTGCAGCATCTTATGTTCAATCACGAGCAAAGGAAACTCACCAAGATAGC TCTGGTTCGAAGCAAGACTTTAGTGAACAATTAGAAATGGAAGGGGAGACCTCACCTCGATTATACAAATCCGAGGTTGCTGCAACAATTGCAGCATCAA CGATGACATCGGTAGTGGCCGCAGGAGAGGAGGAGAAACAAGAGACTGCCAAGGACCTCCAGTCACTCCAGTCATCACCTTGCGAATGGTTTGTGTGTGA CGATTTGGGCACATACACTCGCTGTTTCGTAATTCAGGGTTCAGACTCTTTTGCTTCCTGGCAGGCAAATCTCTTCTTCGAACCTGTTAAGTTTGAGGGA ACTGATGTGCTCGTTCATAGAGGAATTTATGAAGCAGCTAAGGGAATCTACGACCAATATATGCCGGAGATAATCAGTCACTTGGAGACATTTGGGGATC GCGCAAAGCTTCAGTTTACAGGCCACTCACTTGGCGGTAGCCTATCGCTTCTAATCCACTTGATGCTCTTGACCAGGAAGGTTGTCAAGCCATCCACCCT CCGACCTGTGGTCACTTTCGGCTCGCCTTTTATTTTCTGTGGAGGTCATAAAGTGCTCAACACTTTGGGGTTGGACGAAAACCACATCCACAATGTGATG ATGCATAGAGACATCGTACCAAGAGCTTTCTCCTGCAACTATCCTGACCATGTTGCAGTACTCCTCAAACGTTTAAATGGAACCTTCAGGTCCCACCCTT GTCTGAATAAGCAGAAGATGTTATACGCACCTCTCGGCAAGATATTCATCCTCCAGCCAGAAGAGGAATCATCACCTTCACACCCATTACTGCCTTCAGG CAGTGCCCTATATACTTTTGATGATTCTGAGTCTGGAAAGTCATCAAAGAGTGCTGCCCTCAAGGCATTTCTCAATCGCCCTCACCCACTAGAAACACTA AGTAACCCTACAGCCTATGGCTCAGATGGAACAATTCTAAGGGACCATGACTCGGGCAACTATCTCAAGGCACTGCAAGGGCTCGTAAGGCAGAACACGA AGACTGTAGCCTGGAAAGCGATGAAGCAGCAGCAAGAGAAGGTTCTGTGGCCACTACTTAAGGCACCCTCTCCTCACTCATGGAACCAGTATGATAATAG AAGTCACGATTTCGACAGCGGCTTGTTGCTGAATAAGGAGGTGATGACTAGAGTGTGA
AA sequence Show only first row Show all	>Lus10009811 pacid=23180205 polypeptide=Lus10009811 locus=Lus10009811.g ID=Lus10009811.BGIv1.0 annot-version=v1.0 MACSSVTMPASPTTTQFGSDLLRSDSSKDLTNQANMRRCYSDGHLCKSLNCLAVSAVQPKLKTSRSFGFPFQIAGSFIPRSVRTLLFDPETSRMTSMEYK ELGNEVGSSDKGSEFGEDEEVKRTNWMERLLEIRSHWRNRHPKDDMGEGSYMDEAGDCYGDGDEDGCLADYDSEEEEEFDCEMFYRLLKRVPWSDTKLFS RLAFLCNMAYVISDIKANDLKRHYGLHFVTSSLEKKAELAAIKAKLEEDSNCVPAIAGFTGELAEDPDQKRPVCPEVAYGIAASAASYVQSRAKETHQDS SGSKQDFSEQLEMEGETSPRLYKSEVAATIAASTMTSVVAAGEEEKQETAKDLQSLQSSPCEWFVCDDLGTYTRCFVIQGSDSFASWQANLFFEPVKFEG TDVLVHRGIYEAAKGIYDQYMPEIISHLETFGDRAKLQFTGHSLGGSLSLLIHLMLLTRKVVKPSTLRPVVTFGSPFIFCGGHKVLNTLGLDENHIHNVM MHRDIVPRAFSCNYPDHVAVLLKRLNGTFRSHPCLNKQKMLYAPLGKIFILQPEEESSPSHPLLPSGSALYTFDDSESGKSSKSAALKAFLNRPHPLETL SNPTAYGSDGTILRDHDSGNYLKALQGLVRQNTKTVAWKAMKQQQEKVLWPLLKAPSPHSWNQYDNRSHDFDSGLLLNKEVMTRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10009811 [exp]	0	1
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	4.0	0.9554
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	4.5	0.9550
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	10.1	0.9379
					Lus10041164 [exp]	10.8	0.9496
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	11.7	0.9497
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	12.4	0.9416
					Lus10014739 [exp]	13.1	0.9299
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	23.7	0.8942
					Lus10018424 [exp]	26.7	0.8464
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	27.0	0.8997

Compare expression of checked genes

Lus10009811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.