Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01030 820 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 473 / 2e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 467 / 1e-149 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 465 / 1e-149 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 451 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 434 / 1e-138 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 431 / 5e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 425 / 8e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 421 / 9e-133 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 418 / 6e-131 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040917 [exp] 1911 / 0 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019735 [exp] 470 / 2e-151 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 456 / 1e-145 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 461 / 4e-145 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 450 / 5e-142 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 439 / 2e-140 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 437 / 9e-140 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 438 / 2e-139 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001220 [exp] 439 / 9e-139 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097000 [exp] 1069 / 0 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 480 / 9e-154 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 476 / 5e-152 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 463 / 1e-148 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G021300 [exp] 457 / 1e-147 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 461 / 3e-147 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 457 / 2e-146 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 451 / 7e-144 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 450 / 3e-143 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 451 / 9e-142 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10009813 pacid=23180154 polypeptide=Lus10009813 locus=Lus10009813.g ID=Lus10009813.BGIv1.0 annot-version=v1.0 ATGAAGGGATCATCAGTGGCAGTGATTTCAATGGTGGTTGTGGTCGCCATGGTGGCGGCAATGCCAGCTGGGGTTTCGGCCATAAACTGCGCACAAGTGA ATGCCTACTTGGCACCTTGCATTCCTTACTTGATCAACGGAGCCGCCGGCGGTGACCCTGCTCCTAAATGTTGCGAGGGAATCGAAAGCTTAAAAACCAA CACTCCTACCGTCGACGACCGTCGTGCGGCTTGTGCTTGCCTCAAGGCCGCCGCCGGACGATACCCAGTCAAGGATGAGGCTGCTTCGTCTCTCCCTACT AAATGCGGCGTCGCTGTCAGCATCCCCATCTCCAAGGCCATCGACTGCCAGAGGTACAAATCACCCATGAACAAACTAGCTACGGTTCACCACTTCCAGG GGGTTCTGGATCCATATCCAGGAACCCATTTACATGCTTCCGTCTCTTCTTTAGCTCAACCTTCCGCCTCCCTTGAAACCGATACGCTTCCGTTGCTGCA TTCCCAACGTTTCAAGCACTTACGGAGCTCCTCGGTTGATGGCAGGCACCTCGTTTCTGTTAAATCAAAGCATGCACAGGTGATAAAATCGTCCCCCGAA AAGTGGGGTTCTGATTCGGATGCTAGTGCTTTGGTTACTTCTTACTTGGAGATAGGCGATCGTGGATCAGCTGTAGTTGTGTTTCTGCTAGGTCTAGAGC AGAATTATGCCTCCTGGAGTTCGTTCTTGGAAGAATTCGAGAAGTTCGGAGGCGAATTAACGGAAATCCTCGTGGTTTACAGGGACTTACAATGTGGAGG GGTGAATTTTGGCAGCAGAGTTGTCACGTTTATGTTGAAAATTTGTGGGATTGAGAGTGATTACTGTCTAGGTTTGGAAATCCATGGTGATTTGATTAAG AAGGGGTTGGATTCCGATGCTTACGTGAGTCTCGCCTTGATGGGGTTTTATAGCAAGTTTAGTAGTGGAGTGGGAATTGCCAACCAGGTATTCGATGAAT TGCCTCAACCAGATGATCACTTGTGGAACGAGGCAGTATTGTTGAACCTGCAGAGTGGCGAGTTCAGTCAGGCTATTGATCTCTTCAGGAGAATGCAGTT TTCGTGTTCGGAGGCTACTGCAAATTCTCGTACGATTGTGAAGATGTTGCAAGCATGTGGGAAAGAAAGAGCTCTGGATCAAGGGAAGCAGATCCATGGG TATATTCTAAAACTTGGATTCCACTCAAACTTGCTGATATGCAACTCATTGGTTACAATGTACTCTAGAAATCAGAAACTGGATCTAGCTACTAAGGCCT TTGATTCGATGAAAGACCCCGATTCGGCTTCCTGGAACGCGATTATCACCAGTCACGCCTTGCATGGAAATTTGAATGATGCTCGGAATCTTTTCCATGA GATGGAATTTTCCGGTATGAAACTGGACATCATCACTTGGAACTGTCTGTTGTCTGGCCATGCTCTACACGCTGTTATCGAACTTGGACTCTTGAATTTC GGGAGACAAATTCATGGATATGTGATCAGAAACGGGCTTGATTTGGATGATGTTTATGTCGGGACTTCATTGTTAGACATGTATATTAAGAATGATTCTT TGTCACTTGCTCAGGCAATGTTTGACAATATGAAGAACAAAAACATATTTGCTTGGAATGCACTGATATCAGGATACTCGTACAAAGGCCGATACGATGA TGCCAAAAAATTGTTGGCTAAAATGGAGAAGGAAGGAACCAAACCAGATTTAGTTACATGGAATGGTCTGGTTGCTGGGTATTTGATGCATGGCAAGAGT AAGGAAGCATTGAGTGTGATCGATGACATCAAAAGTTCGGGTTTAAGGCCGAATGTGGTTACATGGACTGCTCTCATATCAGGCTTTTCTCAGCAAGAAA AGTACAGGATATCCTTGGACAATTTCATGCAAATGCCACGAGAAGGGGTTTCGCCTAATTCCACCACGATTTCCAGCTTGCTACGAACCTGTGGCGGCCT CTCTTTGTTGCAGAAGGGTAAAGAAGCTCACTGCTTCAGCATCAAAAACCGGTTCGTCAAAGGTGTTTACATAGCCACAGCTCTTATAGACATGTACAGC CAATCAGTCTACCTAAAGAGTGCATATGCAGTTTTCAAGAAGACCAAGACCAAAACCTTAGCCTGCTGGAACTGCATGATGATGGGATTTGCGAATTTCG GGCTCGGAAGAGAAGTGATTTCACTTTTCAACCGAATGCGAAGATTTGGTATCAATCCCAATGCCATATGCTTCACAGCTGTGCTCCCTGGTTGTAAGAA CTCGGGTTTAGTGACCGAGGGATGGAAGCATTTCGACAGCATGAGCCAAAATTACGGGCTAAATCCGACAACTGAGCATTACTCTTGCATGGTGGATCTT TTGGGAAGAGCTGGCTATCTTGATGAAGCTTGGGATTTTATCAAAAGAATGCCTTTAAAACCAGATGTCACAGTGTGGGGTGCTTTTCTTGGATCCTGCA GAATCCACAGAAATTTGGAGTATGCAGAGATTGCATCAAGACATCTTTATGCACTGGAACCTCATAATTCTGCTAACTATGTTTTAATGATGAGCTTATA TGCCATATCAAAGAGATGGGAAGATGTAGAGCGAACAAAAGATCGCATGTTTATTGAAGGGTTGAAACCCGGACCGATATGGAGCTGGATACAGATAGAT GGACTAGTTCACGTGTTCACTGCTGGTGGAAAACCACATAAAGATGAAGGGGAGATTTACTTCGAGCTTTACCAAATGGTTTCGCGGATCAAAGAGCTCG GATATGTGCCTGACACGAACATCATACTTCAGAAGGTGGACAATGCGGAGAAAGAGAAGCTGCTTCTGGGTCACACAGAGAAACTGGCAATAACTTATGG ACTGATCAAGAGAAGTCGTAGCAATATGCATATCCGAGTGATCAAGAACACGAGAACTTGTTCGGACTGCCACTCGGCTGCTAAACTAATATCCGTAGCC AAGGGCTGCAAGATTCTCCTAAGAGATGGCGTTCGTTTCCACCATTTCAAGGAAGGTAAGTGTTCTTGCAATGACTTCTGGTAG
AA sequence Show only first row Show all	>Lus10009813 pacid=23180154 polypeptide=Lus10009813 locus=Lus10009813.g ID=Lus10009813.BGIv1.0 annot-version=v1.0 MKGSSVAVISMVVVVAMVAAMPAGVSAINCAQVNAYLAPCIPYLINGAAGGDPAPKCCEGIESLKTNTPTVDDRRAACACLKAAAGRYPVKDEAASSLPT KCGVAVSIPISKAIDCQRYKSPMNKLATVHHFQGVLDPYPGTHLHASVSSLAQPSASLETDTLPLLHSQRFKHLRSSSVDGRHLVSVKSKHAQVIKSSPE KWGSDSDASALVTSYLEIGDRGSAVVVFLLGLEQNYASWSSFLEEFEKFGGELTEILVVYRDLQCGGVNFGSRVVTFMLKICGIESDYCLGLEIHGDLIK KGLDSDAYVSLALMGFYSKFSSGVGIANQVFDELPQPDDHLWNEAVLLNLQSGEFSQAIDLFRRMQFSCSEATANSRTIVKMLQACGKERALDQGKQIHG YILKLGFHSNLLICNSLVTMYSRNQKLDLATKAFDSMKDPDSASWNAIITSHALHGNLNDARNLFHEMEFSGMKLDIITWNCLLSGHALHAVIELGLLNF GRQIHGYVIRNGLDLDDVYVGTSLLDMYIKNDSLSLAQAMFDNMKNKNIFAWNALISGYSYKGRYDDAKKLLAKMEKEGTKPDLVTWNGLVAGYLMHGKS KEALSVIDDIKSSGLRPNVVTWTALISGFSQQEKYRISLDNFMQMPREGVSPNSTTISSLLRTCGGLSLLQKGKEAHCFSIKNRFVKGVYIATALIDMYS QSVYLKSAYAVFKKTKTKTLACWNCMMMGFANFGLGREVISLFNRMRRFGINPNAICFTAVLPGCKNSGLVTEGWKHFDSMSQNYGLNPTTEHYSCMVDL LGRAGYLDEAWDFIKRMPLKPDVTVWGAFLGSCRIHRNLEYAEIASRHLYALEPHNSANYVLMMSLYAISKRWEDVERTKDRMFIEGLKPGPIWSWIQID GLVHVFTAGGKPHKDEGEIYFELYQMVSRIKELGYVPDTNIILQKVDNAEKEKLLLGHTEKLAITYGLIKRSRSNMHIRVIKNTRTCSDCHSAAKLISVA KGCKILLRDGVRFHHFKEGKCSCNDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	1.0	0.9825
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	2.2	0.8784
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	3.9	0.8881
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	4.0	0.9052
AT3G22430			unknown protein		Lus10041205 [exp]	4.9	0.8783
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	6.0	0.8837
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	6.9	0.8332
AT1G69160			unknown protein		Lus10026677 [exp]	8.0	0.8238
AT3G22430			unknown protein		Lus10041204 [exp]	8.5	0.8397
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	9.5	0.8583

Compare expression of checked genes

Lus10009813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.