Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62900 273 / 4e-74 CW-type Zinc Finger (.1) AT1G02990 251 / 2e-67 unknown protein AT4G15730 184 / 9e-47 CW-type Zinc Finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040919 [exp] 1645 / 0 AT3G62900 307 / 6e-85 CW-type Zinc Finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209409 [exp] 533 / 1e-162 AT3G62900 285 / 7e-78 CW-type Zinc Finger (.1) Potri.014G132900 [exp] 523 / 1e-158 AT3G62900 322 / 2e-89 CW-type Zinc Finger (.1) Potri.013G020200 [exp] 211 / 7e-55 AT3G62900 174 / 1e-43 CW-type Zinc Finger (.1) Potri.005G028700 [exp] 196 / 2e-50 AT3G62900 176 / 5e-44 CW-type Zinc Finger (.1) Potri.004G035300 [exp] 46 / 0.0003 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Lus10009815 pacid=23180123 polypeptide=Lus10009815 locus=Lus10009815.g ID=Lus10009815.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAGACGGAGCTTGAGGAAGGGGAGGCTGCTTGCTCTTACCAGAGTCATAATAACCACCACAGCAATGATGATGATGATGCCACCATGGACC CTGATGTTGCTCTCTCTTACCTTGACGAGAAACTTCAACACGTCTTGGGGCACTTTCAAAAAGATTTTGAAGGTGGAGTTTCAGCAGAGAATTTAGGAGC CAAGTTTGGTGGTTATGGTTCATTTTTACCTAGCCACCGCTCACCTATTTGCTCTCACCCTCGGACTCCTCCGAATGTCCAGCATGGTAGTAGTGTGCCT AAATCTCCAAGCCCTTCACAAATCGGGGCCGGTCATCGAAGCTCTGATTCATCAGGTGCACTGCAGACAGTAAGGCCTGGTCCTATCTCTGCCAGTGCAG TGACGCAGCCTTCAACGAAGATGCCATCCTTGACTCTAGCTTCAAGCAAAAAAGAAGGCCGTATGACATCTGCTCGTGTTGCTGAGGAAGTCAATGGTCG AGAAATATTAAATAAGCAGTCTAATGGTTTGCCCGATTCGAAAAGGCTCAAGTTCCGCATCAAAGTAGGCTCTGATAAATTGTCGCTGAAAAATAATGCT GCTATCTATAGTGGTCTTGGGCTTAATGTCTCCCCATCTTCATCTATGGAGGATAGCCCCTCGGAAAGTGAAGGAATATCTCATGAACTTCACCATGCTT CATTTGAATCTCCTGGGCATATCATTCAGATAATGACTTCTTTCCCAGTGCATGAAGGAGTACTGCTATCACCACTTCCTGATGTTCTAATTCGTTTGAC CGAAAAGGAAAAACTTACAAGGGAATATGGATCCATATCTATTTCAAAGCTTAATCCGAAAATGGTTGGACAGGAGAAAATGAAGTTTCTAGAGAGGTTT AATATTTCCTCAGAATCAAAAAATGACTATAAGAAGGTTTCTGAACGTGATATTGACATCATGTCAAGGATGGAGCTGGACCTTGACAGTCTAGCATGTG ATAGAATAGTTTCTGATACCTTGAAACTGCCACTGCTATCTGGCCCATATTCTATCACGGGCGAATCCATAAAAGGCTCAGGGAGGCCATTGCCATCGTC CAAAGAAGTAAGCAATGAGGGAGTGCAGGACCATGTTGTTATTGCCCCGGCAAAGGCGCCATTAATTACAATAGCTCCTAAAGAGGATGGCTGCATTGTA AATCCCAAAGCCACTTCGGTTTGTGAGGGATGGGAAGACAAGAAAAATGAATCTCTTAATAGTGCTTCTGAATGCTCCAGGAAAGGTGGCCCTGACAGAG GAGAAAAATCTTCTAACTTCATGAAAATCGACACTAGTGTTTCTAAGGCTGGGAAAACTTTGAAAGCTGAGTCAACTGAATGGACAAAGCATAGAGATGA CCGTAAAACTACGTCCCACAAATCAGAAGGTGAGGAGTTGCCTACCAGTAAAGAGCGTTTACCATCTGAAGGAAAGAAGAAATCAAAGAAAAGTCAAAGT CACGGCAATATGGTTGCTGACATTACAAAGGCTAGCGCTGTTGTTACTCCTTATTCAGCAGCAAGAAGTCGGAAGGGTTCACATGCAGATGATTCAACAG AAGTGGAATTAGGCGACCTCAAAGTCCAAAAAACTATGGTAAAAAACAGGGATCGATATAGTGAATTTTTTGGGGACATGGAACTAGAACAAGAAGACAA CCAGCCAAGTCCATTGGATACAAGTGTTAAGGATAGGCAGAACTCCTCTCGGATGGTTGAAAAGGAAACCCATGGTGTTAACAAAGCACTTAGCGAGAGA TTGAAGGGCAAGAAAATTGATAAGATGTTAGCATCAGATGCTTATTCCAAACAGGTTTCAAGTGCGCCTCTGCACCCTCATGTTGGGCCTACATTGGATG CCGCTCATGCAAGTACAGCCCCTGTAGTGGAAGAACAAGACAACTGGGTTGAATGTGTTTTGTGTGAGACATGGCGACTTCTTCCGCCTGGAAAGCATCC AGATCTGCCCGAGAATTGGCAATGCAGTATGCTTGACTGGCTGCCTGACATGAATATATGTGAAATTGGAGAGGAAGAAACTACGAGAGCTGTTCGAGAA TTGTACCCAGTTCCTCTTCCGTACGGTCTAGGTTCTTCGTCTGGCATTCCTGGTGGGTCTATGTCCAGAGTATCCTTGAGTAGTGTTCGACCCAGCGACC CAATGACTGTTACTGGCAGAAAAAAACATGGCTTGAAAGAACCATCAAATATAATAAATAAAGACGGTCCAACGCAGCTATCACATTCTGCAAGGAAGGC AGTGGGGACTAGTAAGCCAAATGGAACCTTAAATGAGGTGTGTCGGTCTCCTATGGTAAGTGAATCTGATTTAGTGAAGTCAAACAGAACTAGTGATGCA GCCATGGGGAAGCAAAAACCTAAGCTGAAAGAGAAGAACATTGCACATGAAAACATTTCATATGGAGGTCAGGTACGTCAAGTAAAGATGAAAAGCAAGA GGGTCTCCGATGAAGAAGTGGTTGAAGCATCCAAGAAGATGAAGACTGAATGTTCCTCAGAAGATCCGATGTCTGATTATGTAATTGAAAAGGTTGGGCT TAGAATTACCTCTGGGAAAATGCGGCCTAAACACTCTAATCGCTCTTCTTCTAAGGACTCAAAGAATGATGAACAAGATCAGAAAAAATTATCCGCTAAA ATGCCAAAGGATGAACTCCATGGTATGTTGGATGTTGGCTCTACAGATAGGAGGAAGCACAGTGGTGGAGAAATTATTAGAAAAAGGAAAATAAAAGAAG AGTACGATGCTAATTTGCCTTCATCTTGCCCTATAAAAGGCAACATCCCTGATATAAAAAGATCCCCGGAGGATAAAACTATTGATTTCAGTCATGGGTC CCTTCAGCCTTCTTACGTGGATTTTCCGGACAAGGACTTTGGTCAAGTTTTACCATGTGCAAAAGATAAACAACAGATAGTGCCTTCTGTTGATGTCACA AATGGTCATGCAGATAAGTTACAGAATGTTGCCAAATGTCACAATGAGGAGAGGCCAAGTGGGAATCATTCTCAATCAAATGGGTCTCGGCCAAGGAAGT CTGCAAAGGGGTCGTCATCTTCAAGGTCTAAGGACCCCAGTTTAGATTCATCTCTTGACAATGGAAGACCCAGAGTGTCTGATTCTACCCCTGCACATGC ACCATATTTTGAGGTACAACCTGTGGATGATACAAACAAGGCAGTTGAGAAGATTGGTTCCAAGCATGACAGAAAAGAGAGCAGATACATCGATAAGAGC TCTGCTGGACTAACAGGGAATGGAAAAACAGATGTTCGTTCTAACTTGGGTGGTCACAGCAGAGGTGATAAAGGACTTGCTAATGATAGTCATGATGCAA AGTCCAGTCTACCATCAGAAGATAGGATGACTTCAAGTAAAGAAAAGTCGATATCAGCAAATCCATGTGGGGGAATACAAGAGGACAAATTACTTTCTGT TCCTGGTACTCAAAAAGGAAATGGAGGGAAAGGCTTTTCAATTAGTACCTCTGAGGCGAACAATCCTTCCAAATCTCAGAAGCAGGCCAGGAAGGTTGAC TATCCCCCAAATGGGATAAATCATAGTGTAGGGAACCAGATGTCAAATGGACTCCGGATCAGGCATCATGATGCCCCTAGTCCAGTTAAAAGGGATTCCT CCAGTCAGGCTGCTAACAATGCATTGAAAGAGGCTAAAAATCTAAAGCACCTGGCAGATCGTATGAAGAATTCTGGGTCGATTAAGGAAAGTATGAAATT TTATTTTGAGGCAAGTTTGAAATTTCTTCATGGAGCTTTTATTTTGGAATCTGGAAGCAATGAAAACGCAAAAGCAGATTTGATTCAGTCACTGACTATC TATACTACAACTGCCAAACTTTTTGAGTTTTGTGCCCATGAATATGAGAAGTCCAGAGACATGGCTGCTGCTGCTCTTGCCTACAAATGCATGGAGGTGG CATACTTGAGAGTAGTACATGGTTCGCATTATACTGCAAACAGAGATAGACATGAGTTGCAGATGGCTCTACAGATGATTCCTACAGGCGAGTCACCTTC CTCATCTGCCTCTGATATTGACAATTTAAATCACCCAACAACAGTGGATAAAGTAACCTTAGGAAAAGGTATCAGCTCTCCTCAAGTGACTGGAAGCCTC ATCATTCCTGGCAGAAATCATCCCCATGTCACCCGGATGTGTACTTTTACACATAATGTAAACCTTGCAATGGAAGCATCAAGAAAATGCCGGATGGCTT TTGCAGCAGCGAGCATAAGCTTGGGAGACTCCCAAAGCGGGGAGGGTATTACATCCATCAAAACGGCTCTTGATTTTAGCTTCCATGATGTAGAAGGATT ACTACGTCTGATACGGCTTGCAGTTGAAGCTATAAGTCGGTAA
AA sequence Show only first row Show all	>Lus10009815 pacid=23180123 polypeptide=Lus10009815 locus=Lus10009815.g ID=Lus10009815.BGIv1.0 annot-version=v1.0 MEEETELEEGEAACSYQSHNNHHSNDDDDATMDPDVALSYLDEKLQHVLGHFQKDFEGGVSAENLGAKFGGYGSFLPSHRSPICSHPRTPPNVQHGSSVP KSPSPSQIGAGHRSSDSSGALQTVRPGPISASAVTQPSTKMPSLTLASSKKEGRMTSARVAEEVNGREILNKQSNGLPDSKRLKFRIKVGSDKLSLKNNA AIYSGLGLNVSPSSSMEDSPSESEGISHELHHASFESPGHIIQIMTSFPVHEGVLLSPLPDVLIRLTEKEKLTREYGSISISKLNPKMVGQEKMKFLERF NISSESKNDYKKVSERDIDIMSRMELDLDSLACDRIVSDTLKLPLLSGPYSITGESIKGSGRPLPSSKEVSNEGVQDHVVIAPAKAPLITIAPKEDGCIV NPKATSVCEGWEDKKNESLNSASECSRKGGPDRGEKSSNFMKIDTSVSKAGKTLKAESTEWTKHRDDRKTTSHKSEGEELPTSKERLPSEGKKKSKKSQS HGNMVADITKASAVVTPYSAARSRKGSHADDSTEVELGDLKVQKTMVKNRDRYSEFFGDMELEQEDNQPSPLDTSVKDRQNSSRMVEKETHGVNKALSER LKGKKIDKMLASDAYSKQVSSAPLHPHVGPTLDAAHASTAPVVEEQDNWVECVLCETWRLLPPGKHPDLPENWQCSMLDWLPDMNICEIGEEETTRAVRE LYPVPLPYGLGSSSGIPGGSMSRVSLSSVRPSDPMTVTGRKKHGLKEPSNIINKDGPTQLSHSARKAVGTSKPNGTLNEVCRSPMVSESDLVKSNRTSDA AMGKQKPKLKEKNIAHENISYGGQVRQVKMKSKRVSDEEVVEASKKMKTECSSEDPMSDYVIEKVGLRITSGKMRPKHSNRSSSKDSKNDEQDQKKLSAK MPKDELHGMLDVGSTDRRKHSGGEIIRKRKIKEEYDANLPSSCPIKGNIPDIKRSPEDKTIDFSHGSLQPSYVDFPDKDFGQVLPCAKDKQQIVPSVDVT NGHADKLQNVAKCHNEERPSGNHSQSNGSRPRKSAKGSSSSRSKDPSLDSSLDNGRPRVSDSTPAHAPYFEVQPVDDTNKAVEKIGSKHDRKESRYIDKS SAGLTGNGKTDVRSNLGGHSRGDKGLANDSHDAKSSLPSEDRMTSSKEKSISANPCGGIQEDKLLSVPGTQKGNGGKGFSISTSEANNPSKSQKQARKVD YPPNGINHSVGNQMSNGLRIRHHDAPSPVKRDSSSQAANNALKEAKNLKHLADRMKNSGSIKESMKFYFEASLKFLHGAFILESGSNENAKADLIQSLTI YTTTAKLFEFCAHEYEKSRDMAAAALAYKCMEVAYLRVVHGSHYTANRDRHELQMALQMIPTGESPSSSASDIDNLNHPTTVDKVTLGKGISSPQVTGSL IIPGRNHPHVTRMCTFTHNVNLAMEASRKCRMAFAAASISLGDSQSGEGITSIKTALDFSFHDVEGLLRLIRLAVEAISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	1.0	0.9589
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10026472 [exp]	4.9	0.9186
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	5.7	0.9129
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036138 [exp]	6.6	0.9016
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	6.9	0.9461
AT1G58230			binding (.1)		Lus10028167 [exp]	8.8	0.9392
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	9.6	0.8959
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10038725 [exp]	10.6	0.8739
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	10.9	0.9082
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	11.1	0.9335

Compare expression of checked genes

Lus10009815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.