Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02560 449 / 6e-143 HD LD luminidependens, Homeodomain-like superfamily protein (.1.2) AT1G19860 44 / 0.0007 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040921 [exp] 1536 / 0 AT4G02560 677 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209216 [exp] 659 / 0 AT4G02560 364 / 4e-109 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.014G132800 [exp] 640 / 0 AT4G02560 349 / 8e-104 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.005G116001 [exp] 45 / 0.0001 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10009816 pacid=23180170 polypeptide=Lus10009816 locus=Lus10009816.g ID=Lus10009816.BGIv1.0 annot-version=v1.0 ATGGCGGGCTTGAAGGAGGATTTCGCGGAGATGGAGATTGGGACCACCGCTGCGTCTTTTCAGAGGTTCATGGATTCGCAGAAGGATCTTTTCCACAGCC AGGTCGACCAGCTTCAGAGAATTGTCGTTACTCAGTGCAAGCTCACTGGTGTCAATCCTCTTTCTCAAGAAATGGCTGCTGGAGCGCTTTCCATTAATAT TGGTAAAAGACCTAGAGATTTGCTAAATCCAAAGGCCATTAAGTACATGCAAGCAGTTTTCTCTATCAAAGACGCTATCAGTAAAAAGGAATCTCGTCAA ATTAGTGCTCAATTTAGCATCACAGTGACACAGGTTCGTGAGTTTTTTACTAGCCAACGTTCGCGAGTAAGGAGACTTGTCAGGCTTGCAAGGGAAAATG GAATCCAAGCTAATTCACTTAAAGAACCAGAAAATAACCTTCAAATAGAGGGGATTCCTAGAGGATCTAATTCAGTTTCCTTAAGCCTTATTGTCCCTGA TATGGTTCCTGCAAGCTCAAATGGCCCACCTGATGTTACCTCAAGCACTGTGTGCCCCTATACAGCGCCCTTACAATCTGTTGGTCCTAACTCTGTCCCT CTGACTGCTGCGAACCTTAATCCTGAAATACTAACCTCTGTCGGCTCTGACTACATCCCATTAAATTGCATCACACCGTATTCAGAACCATTGTTGTCTG CGGGACCTGCCAATTGTGAAGGAGGACAATCTTTTTCGAAACAGGAAGAGATATTACCAGGTTTAGATGACTCAGAAAAGCATTTTGTTGAAACTATTTT CGGTTTGTTGAAGAGAGAAGAGACCTTTGGTGGCCAGGTCAAACTGATGGAGTGGGTCTTGCAAATTCAGAATCTCACAGTACTATACTGGTTCCTAACT GAAGGTGGGGTTATGATATTGGCAACGTGGCTGACTCAAGCCGCTGCAGAAGAACAAACAAGTGTTCTGCTTGTTGCCCTTAGGGTCCTCTGCCACTTGC CTTTGCATAATGCTTTTCCCGAGCATATGTCTGCTATCCTGCATAGTGTAAATACACTGAGGTTTTACAGGACATCAGACATTTCGAGCAGGGCAAGGAT TTTGTTAGCGAAGTGGACCAAGTTGTTCGCACGTAGTCAGTCTCTTAGAAAACCTAATGGCGTTGGGTCTTCTATTGATGCACAGGATATGATACTGAAG AAAAGCATTGATGAAATAATGAGCAATGGATTTTCGCAGACTGATATTGGTCACACAGAAGGTAGTCTTGCTTTTCCCTCTGGGAATTCAGAGAATGTCA GGAGGATGGAGTCTTCACAAACAATGAAGTTATTGCCAGCTTCTTCTGATGATTCAAGCAGGAAGCACATTTTAGGATCTCCATCTCTAGCAGATACCAG AGAGCGTAGAAAAGTTCAGCTTGTGGAGCAGCCTGGCCAGAAACCATCTTCTCGAAGCCCTCAAGGAGCGAAATCTGGATCGATTAGTCAAGGTCGTCCA ATGTCTGCTGATGATATCCAAAAAGCAAAAATGCGAGCATTATACATGCAGAGCAAGTATGGGAGGAAATCTAATTTGTCTAATGGTAGCAACAGTATTA AGAATGGCGTAGTTGACAAAATGCCAACTGTGTCAATAGGCAGCTCATCTCAAGTTTCTAAGGTTCTTGCTAAACTAAAGAGAGAAGAACCCAACGAACC TGTGATAGCTGCTGCGCCTATGAGTATTTGTATGGGTGAACACCTGGATAATACTATGCTACAAGTAGAATCACAGGTGGTTTCCAAGGCTCTTGCTGAA CCAAAGAATGAAGAACCCAAGGAACCAGTGATAGATGCTGCGCCTATGAGTATTTGTAAGATTGAACACCCGGATACTATTATGCTAAATGTAGAATCAA CGGCGTTTTCGAAGGCTCACGCTGAACCAAAGGATGAAGAAGTTAAGGAACCTGTGGTATCTACGCCTAAGAGTACTTATAAGGATGAACACCAGCATGC TACGGAACAAAAAGTAGCACTGAAAGTGCCAATTAAGCAGATATGTTCCAGGCCCCAGATCCGATGGCATTCACCAACAGAGGTAAAACTCGACGTTGAG TGGCGGGTTGGCACGGGTGAGTTCAGCAAGGAAGTTGAGGTCCAGAGAAATAGAAATCGGAGGGAGATGGAAACTATATACAGGGATGTCAAAAAGATAC CATCTAATCCCAAGGAACCATGGGACCTTGACATGGACTATGACGACTCGCTAACCCCTGAAATTCCAATTGAACAACAACCCGATGCAGATGGTACAGA TACGCAGATTCCTGATAACCAACTTGAGAATCCAGTGGCTGGTGCTCCCACCATAGTTAATGGTGGGGTCGCAGCAGTGGCAGAGCCCGATCTAGAGCTG CTTGCTGTTCTTTTGAAGAATCCAGAACTAGTTTTCGCTCTGACGTCTGGACAAGCAGGGAATCTATCTAGTGACGACACTATGAGGTTGCTTGAGATGA TGAAGACTGGTGGTATTGCTTTAGGTAATAGTGTAAATGAATCAGATGGGAAGGTTGGAGAAGTATCTCTCCCGTCGCCAACTCCTTCGAGCAACAATCC TAGAACGGTGCGTGACTCCGGACTCCCATGCTGCTGCAAGTTTTGTCACAAATCTTTGAACCCCCATCTAGATTTCCCTGGGGAACAGCTTTTTGCTGTT TACATGGTGGTAGTAGTTTTGATTTTTATAGAAAAAAATGATAATTCCATTGAATCCAAGGCATTCTTTCACCATCCTTGGCCCGTATTCGGCTGA
AA sequence Show only first row Show all	>Lus10009816 pacid=23180170 polypeptide=Lus10009816 locus=Lus10009816.g ID=Lus10009816.BGIv1.0 annot-version=v1.0 MAGLKEDFAEMEIGTTAASFQRFMDSQKDLFHSQVDQLQRIVVTQCKLTGVNPLSQEMAAGALSINIGKRPRDLLNPKAIKYMQAVFSIKDAISKKESRQ ISAQFSITVTQVREFFTSQRSRVRRLVRLARENGIQANSLKEPENNLQIEGIPRGSNSVSLSLIVPDMVPASSNGPPDVTSSTVCPYTAPLQSVGPNSVP LTAANLNPEILTSVGSDYIPLNCITPYSEPLLSAGPANCEGGQSFSKQEEILPGLDDSEKHFVETIFGLLKREETFGGQVKLMEWVLQIQNLTVLYWFLT EGGVMILATWLTQAAAEEQTSVLLVALRVLCHLPLHNAFPEHMSAILHSVNTLRFYRTSDISSRARILLAKWTKLFARSQSLRKPNGVGSSIDAQDMILK KSIDEIMSNGFSQTDIGHTEGSLAFPSGNSENVRRMESSQTMKLLPASSDDSSRKHILGSPSLADTRERRKVQLVEQPGQKPSSRSPQGAKSGSISQGRP MSADDIQKAKMRALYMQSKYGRKSNLSNGSNSIKNGVVDKMPTVSIGSSSQVSKVLAKLKREEPNEPVIAAAPMSICMGEHLDNTMLQVESQVVSKALAE PKNEEPKEPVIDAAPMSICKIEHPDTIMLNVESTAFSKAHAEPKDEEVKEPVVSTPKSTYKDEHQHATEQKVALKVPIKQICSRPQIRWHSPTEVKLDVE WRVGTGEFSKEVEVQRNRNRREMETIYRDVKKIPSNPKEPWDLDMDYDDSLTPEIPIEQQPDADGTDTQIPDNQLENPVAGAPTIVNGGVAAVAEPDLEL LAVLLKNPELVFALTSGQAGNLSSDDTMRLLEMMKTGGIALGNSVNESDGKVGEVSLPSPTPSSNNPRTVRDSGLPCCCKFCHKSLNPHLDFPGEQLFAV YMVVVVLIFIEKNDNSIESKAFFHHPWPVFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	0	1
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	1.7	0.9663
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10040472 [exp]	2.6	0.9482
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	2.8	0.9545
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	3.9	0.9536
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	4.2	0.9451
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	4.5	0.9532
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	4.7	0.9444
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	6.3	0.9505
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	6.9	0.9499
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	9.4	0.9479

Compare expression of checked genes

Lus10009816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.