Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47830 166 / 3e-49 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040922 [exp] 299 / 2e-100 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2) Lus10000033 [exp] 212 / 4e-70 AT2G47830 186 / 3e-57 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209023 [exp] 175 / 4e-52 AT2G47830 495 / 1e-172 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10009817 pacid=23180130 polypeptide=Lus10009817 locus=Lus10009817.g ID=Lus10009817.BGIv1.0 annot-version=v1.0 ATGGGATTCAGATTCCGCAGTTTCAATCCCGTCTGCCGATCATGCCTCCATCGAGAAGTTCTGCGCCCTTCTTCAGCTTCTCTTTCTCTTCTTCCTTCCT CAGCTCCTCTTGTCCCTCACCTTCCTCATCCCAACATCCCCATCCGCTGGCATTTCGGCCACTCCCATTTCGACCCCGAACACCACCACCTCAACACTTC CGACGCCGGCGAGGAGGGTGAAAAGATCTTCCGTCTCGGCTTTGCCGCAGATATTGGGTTATCCATCGGGAAGGCCTTTACTGGATATTTGACCGGGAGT ACTGCTATTATTACCGATGCCGCTCATTCTATCCCCGACGTGGTTCTTAGTGGAGTTGCCTTGTGGTCATTCAAAGCTGGGATGACTCCTAAAGATAGGG AACATCCTTATGTGTCCGTTGCTCCTGAAGTGATAAACCATTCATCCAGTATCGAAGGTCTGCACAATCATGCCCATGGTGGGCATCATCATGGGATTGA CTTGGAGCGCCCAATCCTTGCATTCAGTATGGCTGCTGTGTCCATATCGGTGAAAGAAGGTCTGTACTGGATAACGAAAAGAGCTGGGGATAAGCTGGGC AGTGGAATAATGAAAGCAAATGCATGA
AA sequence Show only first row Show all	>Lus10009817 pacid=23180130 polypeptide=Lus10009817 locus=Lus10009817.g ID=Lus10009817.BGIv1.0 annot-version=v1.0 MGFRFRSFNPVCRSCLHREVLRPSSASLSLLPSSAPLVPHLPHPNIPIRWHFGHSHFDPEHHHLNTSDAGEEGEKIFRLGFAADIGLSIGKAFTGYLTGS TAIITDAAHSIPDVVLSGVALWSFKAGMTPKDREHPYVSVAPEVINHSSSIEGLHNHAHGGHHHGIDLERPILAFSMAAVSISVKEGLYWITKRAGDKLG SGIMKANA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	0	1
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	1.0	0.8482
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	2.0	0.8224
					Lus10027352 [exp]	2.4	0.8374
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010186 [exp]	3.5	0.8283
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	7.7	0.7935
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	8.7	0.7991
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	9.5	0.7554
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	10.5	0.7632
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	11.5	0.7309
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	11.7	0.7736

Compare expression of checked genes

Lus10009817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.