Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45760 107 / 1e-28 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT3G61190 96 / 1e-24 BAP1 BON association protein 1 (.1.2) AT1G09070 54 / 2e-08 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT4G15755 52 / 4e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 43 / 6e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 41 / 0.0003 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 40 / 0.0008 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040924 [exp] 378 / 3e-135 AT2G45760 119 / 3e-33 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10036571 [exp] 220 / 3e-73 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040923 [exp] 212 / 5e-70 AT2G45760 110 / 4e-30 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10003570 [exp] 42 / 0.0002 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 41 / 0.0005 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155300 [exp] 137 / 9e-41 AT2G45760 120 / 4e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.014G078700 [exp] 135 / 6e-40 AT2G45760 116 / 1e-32 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.014G078600 [exp] 127 / 8e-37 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.010G024200 [exp] 57 / 7e-10 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 56 / 3e-09 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G070400 [exp] 53 / 4e-08 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G026700 [exp] 50 / 3e-07 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1) Potri.013G107175 [exp] 49 / 1e-06 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 45 / 2e-05 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 42 / 0.0001 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009818 pacid=23180147 polypeptide=Lus10009818 locus=Lus10009818.g ID=Lus10009818.BGIv1.0 annot-version=v1.0 ATGGCGAAATCCAGCAGGAGTCTCGAATTCACCATTCTGTCCGCGGAAGACCTTCGCATCGACGGAAGGCCCGTCAAAAAGAACGCCTTTTCCCTGGTGA GAACCGACCAATTCAATTCCAAATCCACCGCCGCCGATCTCGACGGCGGGAGCTACCCTCGCTGGAACGAGAAGTTAGTCGTGGATTTTCCCAGAGGGGC TCAGTCTGTGACCGTTGAAGTACTCCAATATTGCAAGGTCGGATCCGCCGGGAACAGAGTGATCGGTACGGTCAGCGTTCCGGTCTCTGAATTTTTGGGA CAATTGACGCCGGAGATTAATTACCTCAATTTTCTCAGCTACAGGTTGCGTGATCCCCGCGGGGTCAAGAACGGAATTATTAATTTTTCCGTTAAGGTTA ACGGCGGCGGCGGAGAAAGAAATGAAGATTACGGTTGTTGTTCTGTATCCGCAAGGACGAAAGACGCGGCGGAATTAGGAGGTAATTACGCACCGTCGTT GTCGTCCTGCTTGGTTCCTGCTAATTGGAGGACGCCGTCGTACCCGTGGGCAGTCCCGGTGGCGCGTGATCGGAATAGCTATGGTGGCGGCGGAGTGGTC ACCGGCGTTCCGGTCTGGGGCGCCAACTCACGTTTCATTTAG
AA sequence Show only first row Show all	>Lus10009818 pacid=23180147 polypeptide=Lus10009818 locus=Lus10009818.g ID=Lus10009818.BGIv1.0 annot-version=v1.0 MAKSSRSLEFTILSAEDLRIDGRPVKKNAFSLVRTDQFNSKSTAADLDGGSYPRWNEKLVVDFPRGAQSVTVEVLQYCKVGSAGNRVIGTVSVPVSEFLG QLTPEINYLNFLSYRLRDPRGVKNGIINFSVKVNGGGGERNEDYGCCSVSARTKDAAELGGNYAPSLSSCLVPANWRTPSYPWAVPVARDRNSYGGGGVV TGVPVWGANSRFI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10009818 [exp]	0	1
AT1G75860			unknown protein		Lus10034539 [exp]	2.2	0.9028
AT1G05170			Galactosyltransferase family p...		Lus10002079 [exp]	4.9	0.8715
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	7.5	0.8952
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	7.5	0.8993
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	9.5	0.8563
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	10.6	0.8832
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	11.2	0.8734
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	12.2	0.8394
AT4G32030			unknown protein		Lus10001935 [exp]	13.2	0.8663
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Lus10036734 [exp]	13.9	0.8639

Compare expression of checked genes

Lus10009818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.