Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00550 544 / 0 DGD2 digalactosyl diacylglycerol deficient 2 (.1) AT3G11670 392 / 3e-129 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040927 [exp] 702 / 0 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10004200 [exp] 399 / 4e-131 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021273 [exp] 382 / 1e-125 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 332 / 3e-106 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 254 / 2e-78 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029404 [exp] 148 / 2e-42 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10033686 [exp] 126 / 8e-35 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G079400 [exp] 599 / 0 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Potri.016G070200 [exp] 395 / 1e-130 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 391 / 4e-129 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10009820 pacid=23180194 polypeptide=Lus10009820 locus=Lus10009820.g ID=Lus10009820.BGIv1.0 annot-version=v1.0 ATGGATAATAAAAGACAACACATCGCGATTTTCACCACCGCTAGCCTTCCATGGATGACTGGAACCGCCGTGAATCCTCTGTTTCGTGCTGTGTATCTTG CCAAGGATGGAGTTAGAGATGTCACTTTGGTGATTCCATGGCTGTCATTGAAGCATCAAAAACTGGTTTATCCAAATAATGTCACCTTCGGTTCTCCTTC GGAGCAAGAAGCTTATGTAGGACACCATGGAAAGAGATGGAAAATCAAGTTCCGCCTTGTGGTCGGAGTAGTGCACACCAATTATTTGGAGTACGTGAAG AGAGAGAGTAATGGCCGAGTCAAAGCCTTGATTCTTAGATATCTCAACACTTGGGTTGTTGAAATCTATTGCCACAAGGTGATCCGGTTGTCCGCTGCCA CCCAGGACTATCCTAATTCCATCATTTGCAATGTCCATGGCGTAAACCCTAAGTTCCTTGAAATAGGAAAGAAAACAATAGAGCTGCAGCAATCCGGTAA GAAGGCGTTCGGTAAAGGTGCCTACTACATAGGTAAAATGGTATGGAGCAAAGGGTACAAAGAGCTTCTTGACCTGCTTCAGAATCACCAAAAGGAGCTA GCTGGGCTGGAAGTAGATTTATATGGCAGTGGGGAAGACTCAAATGAAGTCCTGGAAGCATTTAAAAAGTTGGAACTAGTTGTTAGAGTACACCCTGGCC GTGATCATGCCGATCCTGTATTCCACGATTACAAAGTGTTCCTGAACCCAAGCACCACTGACGTGGTTTGCACAACAACCGCGGAAGCTCTAGCAATGGG GAAAACAGTCGTGTGTGCCAACCACACATCGAACGACTTCTTCAAGCAGTTCCCCAATTGTCGGACTTACGACGACAGCCACGGATTCGTAGAGGCCACC AACACGGCCTTGAAGGAAGAGCCTGCCGAACTCATGGACGCCCACAGGCACGAACTCTCGTGGGAGGCAGCCACGGAACGGTTTCTGAAAGTAAGCAATC TTCAGCAGGCCGAGGAAGGAACTTCTTCAAAGAAACTGTCGAAACGTCCTTCAAAGAAGCTCTTCGCATCAACCTCCATCAACTTGCGGAAGAACATCGA GGAAGCATCGGCATACGTGCACTTTGTCGCCTCTGGGTTCGAGACGTCAAGAAGAGCTTTCGGCGCGATTCCTGGGACCCTGCAACCCGATGAAGAACAA TCGAAAGAGCTGGGCCTGCAGACTCCTCCCAAGACGCGGAGCTCAAGCGCGAAGAAGAGCTCGAGCTTTTGA
AA sequence Show only first row Show all	>Lus10009820 pacid=23180194 polypeptide=Lus10009820 locus=Lus10009820.g ID=Lus10009820.BGIv1.0 annot-version=v1.0 MDNKRQHIAIFTTASLPWMTGTAVNPLFRAVYLAKDGVRDVTLVIPWLSLKHQKLVYPNNVTFGSPSEQEAYVGHHGKRWKIKFRLVVGVVHTNYLEYVK RESNGRVKALILRYLNTWVVEIYCHKVIRLSAATQDYPNSIICNVHGVNPKFLEIGKKTIELQQSGKKAFGKGAYYIGKMVWSKGYKELLDLLQNHQKEL AGLEVDLYGSGEDSNEVLEAFKKLELVVRVHPGRDHADPVFHDYKVFLNPSTTDVVCTTTAEALAMGKTVVCANHTSNDFFKQFPNCRTYDDSHGFVEAT NTALKEEPAELMDAHRHELSWEAATERFLKVSNLQQAEEGTSSKKLSKRPSKKLFASTSINLRKNIEEASAYVHFVASGFETSRRAFGAIPGTLQPDEEQ SKELGLQTPPKTRSSSAKKSSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	0	1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	3.0	0.8355
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	6.0	0.7969
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	8.8	0.8209
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	10.2	0.8115
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	12.4	0.8054
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	12.5	0.8051
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	13.3	0.8059
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	13.9	0.7978
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	18.3	0.7619
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	19.8	0.7683

Compare expression of checked genes

Lus10009820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.