Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00560 391 / 5e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040928 [exp] 395 / 1e-139 AT4G00560 271 / 4e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10040929 [exp] 107 / 3e-29 AT4G00560 81 / 3e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G079700 [exp] 435 / 2e-154 AT4G00560 436 / 1e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04321 [flax] [poplar] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Lus10009821 pacid=23180181 polypeptide=Lus10009821 locus=Lus10009821.g ID=Lus10009821.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAGACGACGACGAAAGTGCTGGTGGTCGGAGGTACGGGCTACTTAGGCCAACACTTACTGGAAGCGCTGTCGAAGATCGGCGGCGACGAGG CCATCCCCTATGATCTAGCATTCACGTACCACTCCGACCCCAGCCCTCCCCAGGCGCTGCTCGCCGCCGTGCCTCACTGCCTCTCCTTCCGCGTCGATCT GCGGACCGGAGATGGATTCGACGCTGTTTCCCGGCGATTCGGCCAGCCTCATATAGTGGTGAACTGCGCTGCAATCTCTGTCCCTCGTGTGTGCGAGAAG GATCCCGATGCGGCCATGGCTATCAACGTTCCTTCCGCTCTGGTTAATTGGCTAGATAAGGATGCTTTCATCATCCATTTATCCACAGATCAAGTTTATG AAGGGGTGAAACCTTTCTACAAGGAGGAAGAAGATGAACCTGCTGCAGTGAATATTTACGGCAAATCCAAAATGGCAGCTGAGAAGTTCATATCTGAGAA ATGCTCGAATTTCGCAATTCTGAGGAGCAGCATCATCTATGGTCCTCAGACTGTTTCCCCTGTTCCCAAGTCTCTTCCAGTTCAGTGGATGGATGGTGTT CTTTCAAAGGGAGAGCCAGTGGAGTTCTTTCATGATGAGTTTCGGTGCCCAGTATATGTGAAGGATGTTGTTAACGTTATCTTGGCCGTGATGAACAAGA GGGTATCAGAAGGTAAGCAAATCCAGCTGCTGTTGAATCTGGGTGGACCAGATAGGCTTTCTCGAGTTGAAATGGCTGAGGTGGTGGCACACGTAAGAGG ACACGATGCACGCTTGATCAAGCGAGTCTCGGCATCATCGGTTGATAGGGGTGTTCGATCTCCAGCTGACATCTCGATGGATGTTTCGAAACTGGTTAAA GAGATTGGTTTTCGACCCACTCCATTCAAAGATGGCGTCAAATTCACTCTTGACAGATCTTGA
AA sequence Show only first row Show all	>Lus10009821 pacid=23180181 polypeptide=Lus10009821 locus=Lus10009821.g ID=Lus10009821.BGIv1.0 annot-version=v1.0 MAEKTTTKVLVVGGTGYLGQHLLEALSKIGGDEAIPYDLAFTYHSDPSPPQALLAAVPHCLSFRVDLRTGDGFDAVSRRFGQPHIVVNCAAISVPRVCEK DPDAAMAINVPSALVNWLDKDAFIIHLSTDQVYEGVKPFYKEEEDEPAAVNIYGKSKMAAEKFISEKCSNFAILRSSIIYGPQTVSPVPKSLPVQWMDGV LSKGEPVEFFHDEFRCPVYVKDVVNVILAVMNKRVSEGKQIQLLLNLGGPDRLSRVEMAEVVAHVRGHDARLIKRVSASSVDRGVRSPADISMDVSKLVK EIGFRPTPFKDGVKFTLDRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10009821 [exp]	0	1
AT1G61900			unknown protein		Lus10020048 [exp]	8.1	0.7778
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10025999 [exp]	11.5	0.7031
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	16.2	0.7207
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	19.7	0.7632
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	21.2	0.7354
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	21.9	0.7596
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	22.6	0.7769
AT4G23820			Pectin lyase-like superfamily ...		Lus10032374 [exp]	26.6	0.7349
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	30.0	0.7234
AT3G23940			dehydratase family (.1.2)		Lus10032616 [exp]	36.7	0.7009

Compare expression of checked genes

Lus10009821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.