Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00570 948 / 0 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT2G13560 753 / 0 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT5G25880 392 / 2e-129 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 377 / 8e-124 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G11670 370 / 7e-121 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT1G79750 369 / 7e-120 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040930 [exp] 1139 / 0 AT4G00570 1011 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10018939 [exp] 768 / 0 AT2G13560 1081 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10028642 [exp] 768 / 0 AT2G13560 1075 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10011772 [exp] 633 / 0 AT2G13560 827 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10043025 [exp] 397 / 2e-130 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 377 / 4e-124 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10025823 [exp] 369 / 2e-119 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10011125 [exp] 355 / 2e-115 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005484 [exp] 333 / 3e-107 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156000 [exp] 1003 / 0 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 984 / 0 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 778 / 0 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G135300 [exp] 777 / 0 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.018G046600 [exp] 387 / 8e-128 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 385 / 9e-127 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 379 / 3e-124 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 365 / 2e-118 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 362 / 3e-117 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10009822 pacid=23180172 polypeptide=Lus10009822 locus=Lus10009822.g ID=Lus10009822.BGIv1.0 annot-version=v1.0 ATGTGGAAGCTCACGCGGCTCGTTGCAGCTTCTAGGAATGTTCGGAGAACGCGGCCTTTCTCCACTGCCATACCTTTGCCCTGTATCGTCCACAAGCGCG GTGCCGACATCCTTCATGATCCTTGGTTCAACAAGGATACTGGGTTTCCTTTAACTGAAAGGGACCGTTTGGGGCTTCGTGGTCTCCTTCCTCCTCGCGT TATATCATTCGAGCAGCAATATGCGCGCTTCATGGAGTCATATCGATCCCTTGAGAGGAATACCGTGGGCCAACCAGAAGGTGTTGTATCGTTAGCAAAA TGGAGGATCTTGAACAGACTTCACGATAGAAATGAGACATTGTACTACCGGGTTCTTATTGATAACATCAAGGATTTTGCTCCGGTGATATACACACCAA CGGTGGGCTTAGTCTGTCAAAACTATTCTGGGTTATTTAGGCGTCCACGTGGAATGTACTTCAGTGCAAAGGACAAAGGAGAGATGATGTCAATGATCTA CAACTGGCCAGCTCATCAGGTAGACATGATAGTCATCACAGATGGTAGTCGTATTCTTGGGCTAGGTGACCTTGGTGTTCAAGGAATAGGCATTCCAATT GGGAAACTTGACATGTATGTTGCTGCTGCTGGCATCAACCCTCAAAGAGTACTCCCAGTTATGCTAGATGTTGGTACCAATAACCAAAAGCTACTGGAAG ATCCTCTATATTTGGGACTCAGACAACCTAGGCTGGAAGGTGAAGAATATTTGACAATTGTTGATGAGTTCATGGAAGCTGTTCACACTCGTTGGCCGAA GGCAATTGTGCAGTTTGAAGATTTTCAAGCAAAGTGGGCTTTTGAAACACTGGAAAGATATCGTGGAAGGTTTTGCATGTTCAATGATGATGTCCAGGGG ACTGCTGGTGTGGCACTTGCCGGATTGCTTGGATCAGTCAGAGCACAAGGTCGACCCTTATCTGATTTTTCGAAACAAAAGATTGTTGTAGTGGGAGCAG GAAGTGCTGGTCTAGGTGTCCTGAAGATGGCTGTACAGGCCGTTTCTAGAATGTCTGGGAACGGTGAAACATCAGCGGCTAAACAGTTTTATGTGCTTGA TAAAGATGGCCTTATTACTCAAGACCGGAAAAATCTTGATCCAGCAGCAGCACCTTTTGCGCAAGACTTGAAAAATGTTGATGGCCTTAGAGAAGGCTGT AGTCTGGTTGAAGTGGTCAAAACACTCAAGCCACACGTGCTTCTTGGTTTATCTGGAGTAGGTGGAATCTTCACTGAGGAGGTCCTGAAGGCCATGAGAG GTTCTGATTCTCCCAGACCTGCAATTTTCGCCATGTCTAACCCCACCATGAACGCTGAGTGTACCGCTGCTGATGCTTTCAAGCATGCTGGAGATAACAT AGTTTTTGCAAGTGGAAGTCCATTTGAAAACGTTGACCTTGGAAATGGCAAAGTTGGGCATGTGAATCAGGCAAATAACATGTACCTGTTTCCTGGAGTT GGCCTGGGAGCACTTCTATCAGGAGCACGTCTTATTACAGATGGCATGTTGCAAGCTGCTGCGGAATGTTTGGCTTCGTACATTACTGAAGATGAGATCC AAAAAGGCATACTGTACCCATCAATCAACAGCATTCGAGACATCACGGCTGAGGTCGGCGCTGCAGTTCTCCGATCAGCAGTCTCCGAGAGGCTGGCAGA GGGACACGGTGAGGTGGGGCCCAAGGAGCTGAAGCAGATGTCAAAGGATGAGACGGTGGAGTACATAACACGCAACATGTGGTACCCGATTTACAGTCCT CTAGTTCACGAGAAGTGA
AA sequence Show only first row Show all	>Lus10009822 pacid=23180172 polypeptide=Lus10009822 locus=Lus10009822.g ID=Lus10009822.BGIv1.0 annot-version=v1.0 MWKLTRLVAASRNVRRTRPFSTAIPLPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESYRSLERNTVGQPEGVVSLAK WRILNRLHDRNETLYYRVLIDNIKDFAPVIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHQVDMIVITDGSRILGLGDLGVQGIGIPI GKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQPRLEGEEYLTIVDEFMEAVHTRWPKAIVQFEDFQAKWAFETLERYRGRFCMFNDDVQG TAGVALAGLLGSVRAQGRPLSDFSKQKIVVVGAGSAGLGVLKMAVQAVSRMSGNGETSAAKQFYVLDKDGLITQDRKNLDPAAAPFAQDLKNVDGLREGC SLVEVVKTLKPHVLLGLSGVGGIFTEEVLKAMRGSDSPRPAIFAMSNPTMNAECTAADAFKHAGDNIVFASGSPFENVDLGNGKVGHVNQANNMYLFPGV GLGALLSGARLITDGMLQAAAECLASYITEDEIQKGILYPSINSIRDITAEVGAAVLRSAVSERLAEGHGEVGPKELKQMSKDETVEYITRNMWYPIYSP LVHEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Lus10009822 [exp]	0	1
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	11.3	0.8793
AT4G15080			DHHC-type zinc finger family p...		Lus10027339 [exp]	13.7	0.8444
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	15.9	0.8671
AT4G16180			unknown protein		Lus10017062 [exp]	19.7	0.8659
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10027886 [exp]	19.8	0.8756
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	23.2	0.8495
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	27.2	0.8640
AT3G19540			Protein of unknown function (D...		Lus10026604 [exp]	31.7	0.8145
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	35.8	0.8579
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	40.7	0.8477

Compare expression of checked genes

Lus10009822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.