Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55010 515 / 0 EMB2818, ATPURM, PUR5 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040931 [exp] 665 / 0 AT3G55010 532 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10039497 [exp] 536 / 0 AT3G55010 489 / 4e-175 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10024142 [exp] 518 / 0 AT3G55010 439 / 3e-151 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198600 [exp] 562 / 0 AT3G55010 526 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Potri.014G123000 [exp] 548 / 0 AT3G55010 520 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [flax] [poplar] AIRS_C AIR synthase related protein, C-terminal domain PF00586 [flax] [poplar] AIRS AIR synthase related protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009823 pacid=23180180 polypeptide=Lus10009823 locus=Lus10009823.g ID=Lus10009823.BGIv1.0 annot-version=v1.0 ATGGATAGGTGTGTGTTTAACCGTTCCTTCCCTGGAAGATCGCTCTCTGTTGCTGCATCTGTAGCTAAAAGGGGACTCAATGGAATCAGGGATGGGTCTG GTGGACTTACATATAAAGATGCTGGTGTAGACATTGATGCTGGGTCCGAACTTGTCAAGAGGATTGCAAAGATGGCTCCTGGAATTGGAGGTTTTGGCGG CCTTTTCCCCATCGGGGATTCATATCTCGTTGCTGGCACAGATGGTGTTGGTACCAAATTGAAACTTGCGTTCGAGACAGGAATCCATAATACTGTTGGG GTTGATTTGGTTGCGATGAATGTCAACGACATAGTCACTTCAGGCGCAAAGCCACTATTCTTTCTTGATTACTTTGCAACTAGCCGCCTTGATGTTGACC TGGCCGAAAAGGTTATAAGAGGCATTGTAGATGGCTGCCAACAATCTGATTGCGCACTTTTGGGAGGAGAGACTGCAGAGATGCCAGATTTCTATGCGGA GGGTGAATACGATCTCAGCGGGTTTGCAGTTGGCATTGTAAAAAAGGACTCAGTTATCGACGGAAAAAACATTGTAGCAGGGGATGTTTTGATTGGATTA CCATCCAGCGGAGTTCATTCCAATGGTTTTTCTCTTGTGAGAAGGGTTTTGGCCAAGAGTGGTGTTTCTCTCAAGGACCAGCTTCCTGGAAACAACCTCA CATTAGGAGAGGCTCTCATTGCACCTACAGTTATATATGTGACTCAGGTGCTTGACATAATCAGCAAGGGAGGAGTAAAGGGGATAGCCCACATCACAGG AGGTGGATTTACAGATAACATACCCAGAGTATTCCCAAAGGGACTTGGAGCTACTATTTACAACAACTCCTGGGATATTCTGCCCGTCTTTAAATGGATC CAAGAGGCGGGAAACATAGAGGATGCAGAGATGAGAAGAACCTTCAACATGGGGATTGGGATGGTTCTGGTGATGACAAAGGAAGCAGGTAGAAGAATAT TGGAGGAGAGGCAACACAAGGCGTATCATATCGGTGAGGTTGTTGATGGCGAAGGAGTGAGCTATCTATAA
AA sequence Show only first row Show all	>Lus10009823 pacid=23180180 polypeptide=Lus10009823 locus=Lus10009823.g ID=Lus10009823.BGIv1.0 annot-version=v1.0 MDRCVFNRSFPGRSLSVAASVAKRGLNGIRDGSGGLTYKDAGVDIDAGSELVKRIAKMAPGIGGFGGLFPIGDSYLVAGTDGVGTKLKLAFETGIHNTVG VDLVAMNVNDIVTSGAKPLFFLDYFATSRLDVDLAEKVIRGIVDGCQQSDCALLGGETAEMPDFYAEGEYDLSGFAVGIVKKDSVIDGKNIVAGDVLIGL PSSGVHSNGFSLVRRVLAKSGVSLKDQLPGNNLTLGEALIAPTVIYVTQVLDIISKGGVKGIAHITGGGFTDNIPRVFPKGLGATIYNNSWDILPVFKWI QEAGNIEDAEMRRTFNMGIGMVLVMTKEAGRRILEERQHKAYHIGEVVDGEGVSYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	0	1
AT1G15420			unknown protein		Lus10007894 [exp]	3.0	0.8759
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	3.7	0.8393
AT5G10110			unknown protein		Lus10022498 [exp]	4.5	0.8525
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	6.5	0.8707
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	6.5	0.8432
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	7.7	0.8418
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	10.4	0.8548
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	11.0	0.8259
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	11.7	0.8431
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	11.9	0.8623

Compare expression of checked genes

Lus10009823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.