Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00590 405 / 3e-140 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT3G16150 69 / 8e-13 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT5G08100 65 / 1e-11 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT5G61540 52 / 4e-07 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040935 [exp] 677 / 0 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 74 / 3e-14 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10034655 [exp] 66 / 8e-12 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034668 [exp] 64 / 3e-11 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080600 [exp] 455 / 9e-160 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G022900 [exp] 73 / 3e-14 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.002G122900 [exp] 71 / 1e-13 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.012G063400 [exp] 64 / 3e-11 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Lus10009826 pacid=23180143 polypeptide=Lus10009826 locus=Lus10009826.g ID=Lus10009826.BGIv1.0 annot-version=v1.0 ATGGACGGTTGCGACGATGAGGAAGCAAGCCCTAGATTCTTTGTTGCTGTCCACGTTGGTGCAGGATATCGCGCTCCTACCAACGAGAAAGCCCTGCGAT CCGCCATGAAACGCGCTTGCACTGCTGCTGCTTCTCTACTTCGCCAGGATGATCCGTGTACAAATGCCGGCAGAGGTTCGAATTTAACAGAAGATGGGCT AGTGGAATGCGATGCTAGTGTTATGGATGGCGATTCTGGTTCTTTTGGAGCTGTTGGTGTAGTGTCAGGTGTGAGAAATCCCATCAAGATTGCTGCTTTA CTTGCCAAGGAACAGATGGCGGATTCTTCATTGTTGGGTCGAATACCTCCAATGTTTTTGGCAGGCGATGGTGCTCATGCGTGGGCAAGATCAAAAGGCA TTCTTTTGGAAGATACCGTGGAAGAGGCTGAGAAGTGGCTGGTAACAAAAAGGGCAAAAGCACAGTGGGCAAAGTTCAAAGAAATGCTCCATAGTGCCAA TACTTCGATCGACACTTTTGATGGGAAAGGGTCTGCCACAGTATCAGGAGGACATGGTGGTGCTTTATCAGTTGTGCCAACATCTCTCGGGGAAGACTCT GTAATGGACACTGTTGGAGTTGTTTGTGTCGACAATGAAGGACACATAGCTTCTGGGGCCTCTAGTGGTGGTATAGCCCTGAAGGTTGGAGGGCGAGTTG GGTTAGCTGCGATGTATGGTTCAGGTTGTTGGGCAGCATCAACAAGTCCCTCTGGTGATCCATTCATAGTCGGTGGTTGTGTTTCCGGTGCTGGGGAATC CTTGATGAAAGGATTTGCAGCTCGGGAATGTTGTGTCTCCACTTCAATTTCTCAGGAAGGCCCTGCATCTGCTAGCAGGAACGTTCTAAGGTCACTAAAA CTGGACCGCAACTGCGATCAAGATGGTGGAAATCAAAGTGCAGGAATTCTACTCGGGCAAGCAGATGCACCAACTGCAACTTCAGGCTGCTCAAGAAAGC TGAAAGCTGTAGAGATAGCAGCTGCATTCTCGTCCTTGTCTTTCGGGATAGGTTATCTTGGGAACTCAATGGAACGGCCAAAGGTATCAGTTCTACGGAA AACGAATCTAGGCAAGACAGGAATCGACCATTTCGAAGAACGGATCGACCTCTATTCCGGTGGATCTTAG
AA sequence Show only first row Show all	>Lus10009826 pacid=23180143 polypeptide=Lus10009826 locus=Lus10009826.g ID=Lus10009826.BGIv1.0 annot-version=v1.0 MDGCDDEEASPRFFVAVHVGAGYRAPTNEKALRSAMKRACTAAASLLRQDDPCTNAGRGSNLTEDGLVECDASVMDGDSGSFGAVGVVSGVRNPIKIAAL LAKEQMADSSLLGRIPPMFLAGDGAHAWARSKGILLEDTVEEAEKWLVTKRAKAQWAKFKEMLHSANTSIDTFDGKGSATVSGGHGGALSVVPTSLGEDS VMDTVGVVCVDNEGHIASGASSGGIALKVGGRVGLAAMYGSGCWAASTSPSGDPFIVGGCVSGAGESLMKGFAARECCVSTSISQEGPASASRNVLRSLK LDRNCDQDGGNQSAGILLGQADAPTATSGCSRKLKAVEIAAAFSSLSFGIGYLGNSMERPKVSVLRKTNLGKTGIDHFEERIDLYSGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00590			N-terminal nucleophile aminohy...		Lus10009826 [exp]	0	1
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10042575 [exp]	32.8	0.7283
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	32.9	0.7608
AT1G58360		NAT2, AAP1	NEUTRAL AMINO ACID TRANSPORTER...		Lus10033759 [exp]	56.9	0.7189
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	79.7	0.7089
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	104.4	0.7272
AT4G24290			MAC/Perforin domain-containing...		Lus10035789 [exp]	111.4	0.6895
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	127.4	0.7209
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022689 [exp]	149.9	0.6788
AT1G38131			O-fucosyltransferase family pr...		Lus10025630 [exp]	150.2	0.6910
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	223.8	0.6633

Compare expression of checked genes

Lus10009826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.