Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00630 339 / 1e-108 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 336 / 2e-107 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G04850 71 / 1e-13 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040938 [exp] 394 / 2e-133 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10018844 [exp] 356 / 5e-115 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 355 / 1e-114 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10020484 [exp] 72 / 1e-14 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10007104 [exp] 70 / 2e-13 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080800 [exp] 362 / 5e-117 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 356 / 7e-115 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 65 / 1e-11 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02254 [flax] [poplar] TrkA_N TrkA-N domain
Representative CDS sequence Show only first row Show all	>Lus10009829 pacid=23180168 polypeptide=Lus10009829 locus=Lus10009829.g ID=Lus10009829.BGIv1.0 annot-version=v1.0 ATGGCCATCACTCCATGGCTAGCTGCTGGCGGTCAGCTAATTGCCTCCCGTTTTGAGTTGCTTGATGTTCGAAGTCTCTTGCCGGTTGAAAGCGAGGTAA TAACATCTGAACTGGGAACAAGGAAATCCACGGTTCGACCAGGTTTAAGTAACCCGTGTGCTTCACTTACGGACGACTTGCTGGACCATATTATTATCTG TGGATTTGGACGTGTTGGCCAGATTATTGCACAGCTTCTTTCAGAGCGATTGATTCCATTTGTCGCCATTGATGTCAGAAGCGATAGGGTCACATTTGGA CGAGCATTAGACCTTCCAGTGTACTTTGGAGATGCTGGTAGCCGTGAGGTCCTCCATAAACTTGGAGCTGACCGAGCCTGCTCTGCAGCGATAACGTTGG ACACACCTGGTGCAAACTACAGAGCTGTTTGGGCTCTCAGCAAGTACTTCCCAAACGTTAAGACCTTTGTGCGGGCGCATGATGTAGACCATGGCCTTAA CTTGGAAAAAGCTGGAGCCTCTGCCGTTGTCCCGGAGACCTTGGAACCAAGTCTACAGTTGGCTGCTGCTGTTCTTGCGCAGGCAAAACTTCCAGCATCT GAGATTGCAGCAACGATAAACGAATTCAGATCCCGTCATTTGTCTGAACTCAGAGAGCTATCTGAAGCCAGTGGAAGCTCCCTTGGCTATGGATTTTCTC GTGAGATGAGTAAGCCAAAACCTCCCCCGTCCTCTGATTCTTCTGACGGAAACCAAATGACAGAAGGAACCCTGGCCGTATGA
AA sequence Show only first row Show all	>Lus10009829 pacid=23180168 polypeptide=Lus10009829 locus=Lus10009829.g ID=Lus10009829.BGIv1.0 annot-version=v1.0 MAITPWLAAGGQLIASRFELLDVRSLLPVESEVITSELGTRKSTVRPGLSNPCASLTDDLLDHIIICGFGRVGQIIAQLLSERLIPFVAIDVRSDRVTFG RALDLPVYFGDAGSREVLHKLGADRACSAAITLDTPGANYRAVWALSKYFPNVKTFVRAHDVDHGLNLEKAGASAVVPETLEPSLQLAAAVLAQAKLPAS EIAATINEFRSRHLSELRELSEASGSSLGYGFSREMSKPKPPPSSDSSDGNQMTEGTLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009829 [exp]	0	1
					Lus10009515 [exp]	11.0	0.8219
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	12.0	0.8495
AT1G64300			Protein kinase family protein ...		Lus10033941 [exp]	17.3	0.8218
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	18.3	0.8217
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	31.7	0.7994
AT5G01970			unknown protein		Lus10031947 [exp]	34.1	0.8131
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	34.7	0.8064
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10011945 [exp]	41.3	0.8008
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	41.7	0.8190
					Lus10009514 [exp]	56.8	0.8138

Compare expression of checked genes

Lus10009829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.