Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01790 497 / 5e-159 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G00630 496 / 7e-159 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT4G04850 112 / 2e-25 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT2G19600 69 / 1e-11 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G51710 69 / 1e-11 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 68 / 2e-11 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017823 [exp] 989 / 0 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10018844 [exp] 934 / 0 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 577 / 0 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10007104 [exp] 163 / 1e-41 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 111 / 3e-25 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10008002 [exp] 70 / 5e-12 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10031106 [exp] 68 / 2e-11 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 67 / 3e-11 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10040549 [exp] 67 / 3e-11 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080800 [exp] 659 / 0 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 656 / 0 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 110 / 1e-24 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.015G132400 [exp] 68 / 2e-11 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.012G130500 [exp] 66 / 6e-11 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.018G054100 [exp] 64 / 2e-10 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.006G230400 [exp] 64 / 3e-10 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10009830 pacid=23180182 polypeptide=Lus10009830 locus=Lus10009830.g ID=Lus10009830.BGIv1.0 annot-version=v1.0 ATGGATGTCGCCTGTGGTGTGTACCGACCTAATTCGCTTTACGGCTGTGAAGGAACAAGTCATCGGGTTTTAAGTAGGTTGCATTCGAGACTTGCTTACA GAAGTCTTAAGCAGGAGTCTATTGATTGGAAGGGTAGGTCTTCTAGGAGGATTAAGAAGGCAGTCATCTGTAGTAGCCGTTTGAATTCGAGTTCGATTTC CATTAGAGGGCTTCACAGTCATTGGTGGAGTGGGTACCCTAACAATTCTATATTCTCTGGTTCATGTGATATTGTTACGGTCCCGAGCAGACTAAAGAGG TATTGCCAGGGTAAAGATTCTTTAGCATACATTGATGAGAATGGTCGAAATGTGGAATTGGAGAAAGATAGCAGTGAGGGTTCTAGAATGGATTCCTCTG ACTCGGTCAAAGAAGTTGGAGAACAAAGAGAAGCTGACATTCTTAGTTTGGACGAGCTTAGGGAGTTGTTGCAGAAGGCTGTTAAAGAGTTGGAAGTTGC ACGATTAAACAGTGCTATGTTTGAGGAGAAGGCACAACAAATCTCAGAAGCTGCAATTGCGTTGAAGGATGATGCAGCAACTGCTTGGAACGATGTTGAT TCAGCGCTGGATTTAATGCAACAGATTGTAAATGAGGAGTCTGTTGCCAAAGAAGCTGCGCAAAAAGCAACAATGTCCCTTTCTTTGGCTGAGGCCAGAC TAATGGTGGCAATAGATTCATCCGAAACTTTGCCAGGGGAGACTGTTTCACCAGAAGAGTCTACAAAGACCAATATTGAATGCAAAGACAATGGAAAAGA CCAACCAATTTTAGCTGCACGGGAAGATATCAAGATATGTCATGAAACTTCGCTGAAGTGTGAGGCTGAGCTGAAGCAATTGCAAAATAAAAAGGAAGAG ATGCAGCAAGAATTGGATAGGTTGAAGGGTGTTGCTGATAAAGCGCAGGAGGATGCACTGAAAGTGGAGGAAGAGGTTGGAAACGTTATGCTTATGGCTG AGCAAGCTGTTGCTGTCGAACTTGAGGCTGCCCAGCGTGTGGATTTTGCAGGAAATGCATTACGCAGAGCAGAAAAGTTCCTCTCTGGGTCTAATGTTGA TACCTCCGAGACAGCACAGGGATACTTTTCTGGTGACGAGGCTGTTCTCGAGGGCGAGAAGGTAGACAATGAGCTCAATGTTGATATTGGAAAAGAAATT GATTTGCTAACCTATGGGGATGTTTTAGTTGGTGAGCCTGTTCAGGAGAGACTGTCTGCTGAAGACTTGGCTCAAATTGACAATACTTCCAATCAAGAGA AGAATGCACAAGTGAGAATTGACCGGCCACAAGCTAGGAAACAGGAAATGCAGAAGGATGCAATGAAAGAGAGCTCACCTCCACCTCAAAAGGCATCATT GAAAAAATCTTCCCGTTTCTTCTCTGCATCGTTCTTCTCGTTCGCTGTTGATGGCGCCGAGTTCACTCCAGCATCAGTTTTCCAAAGTCTTATGCAGTCT GCAAAGAACCAATTGCCTAAGCTCGTTGTTGGCCTGCTGCTGGTTGGAGGAGGGGTTGCGTTATACGGTAATCGGGTAGATAGGAGGTCTCAGCTGCTTC AGCAGTCAGAGATTGTCACCTCCAGCATTGAAGAAGTTTTCTCCAGTGCAAAACCCTTGATTGTTCATATGAAAAAGTTACCTAAAAAAGTCAAACAACT ACTTGCAAAGCTTCCACATCAAGAGATCAATGAGGAGGAGGCTTCTCTAATTGATATGCTGTGGTTACTTCTTGCCAGTGTCATATTTGTGCCGATCTTT CAGAAAATTCCTGGAGGTAGTCCTGTTCTTGGATACTTGGCTGCTGGCATTTTGATTGGTCCTTATGGCCTGTCTATCATCCGTAACGTGCATGGAACAA AGGCGATTGCTGAATTCGGAGTTGTTTTCCTGCTGTTCAATATTGGCCTTGAGCTGTCTGTTGAAAGACTTAGTTCCATGAAGAAATATGTCTTTGGATT AGGCTCAGCTCAGGTCTTGGTAACAGCAGTTACTGTGGGTATGGCTGCATATATTCTTGCTGGGCTACCTGGTCCTGCTGCAATTGTCATTGGGAATGGT TTAGCATTATCTTCAACTGCTGTTGTTCTACAGGCAATAGCTGAGGCTCTTGGAGCCGCTGCTGTTAAAGCCGTTGTTGCTATCACTGCCATTATCGCTG GTGGACGCTTGCTCCTTCGGCCAATATATAGGCAGATTGCTGAAAATCAGAATTCGGAGATATTTTCTGCGAATACACTTCTTGTTATTCTTGGAACTAG TCTTCTCACTGCCAGGGCGGGACTGTCCATGGCACTGGGGGCATTTCTAGCTGGTCTGCTCCTTGCTGAAACTGAATTTTCATTGCAAGTTGAATCAGAT ATTGCTCCGTACCGCGGTCTTCTCTTGGGTCTCTTCTTCATGACAGTTGGAATGTCAATTGATCCGAAACTGCTCCTTTCAAATTTCCCTGTCGTTATGG GGACACTGGGGCTGCTAATAGCATGGAAGACACTTTTGGTTACGTTAGTTGGCAAGGTCTTTGGTGTTTCCATTATATCTGCAATAAGAGCTGGCCTCCT TCTTGCTCCTGGTGGCGAATTCGGCGAGTGCCATCACTCCATGGCTAGCTGCTGGCGGTCAGCTAATTGCCTCCCGTTTTGA
AA sequence Show only first row Show all	>Lus10009830 pacid=23180182 polypeptide=Lus10009830 locus=Lus10009830.g ID=Lus10009830.BGIv1.0 annot-version=v1.0 MDVACGVYRPNSLYGCEGTSHRVLSRLHSRLAYRSLKQESIDWKGRSSRRIKKAVICSSRLNSSSISIRGLHSHWWSGYPNNSIFSGSCDIVTVPSRLKR YCQGKDSLAYIDENGRNVELEKDSSEGSRMDSSDSVKEVGEQREADILSLDELRELLQKAVKELEVARLNSAMFEEKAQQISEAAIALKDDAATAWNDVD SALDLMQQIVNEESVAKEAAQKATMSLSLAEARLMVAIDSSETLPGETVSPEESTKTNIECKDNGKDQPILAAREDIKICHETSLKCEAELKQLQNKKEE MQQELDRLKGVADKAQEDALKVEEEVGNVMLMAEQAVAVELEAAQRVDFAGNALRRAEKFLSGSNVDTSETAQGYFSGDEAVLEGEKVDNELNVDIGKEI DLLTYGDVLVGEPVQERLSAEDLAQIDNTSNQEKNAQVRIDRPQARKQEMQKDAMKESSPPPQKASLKKSSRFFSASFFSFAVDGAEFTPASVFQSLMQS AKNQLPKLVVGLLLVGGGVALYGNRVDRRSQLLQQSEIVTSSIEEVFSSAKPLIVHMKKLPKKVKQLLAKLPHQEINEEEASLIDMLWLLLASVIFVPIF QKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVTVGMAAYILAGLPGPAAIVIGNG LALSSTAVVLQAIAEALGAAAVKAVVAITAIIAGGRLLLRPIYRQIAENQNSEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESD IAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVVMGTLGLLIAWKTLLVTLVGKVFGVSIISAIRAGLLLAPGGEFGECHHSMASCWRSANCLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009830 [exp]	0	1
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024136 [exp]	2.8	0.7802
AT1G63490			transcription factor jumonji (...		Lus10008531 [exp]	3.0	0.8125
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	7.7	0.7527
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	10.5	0.7192
AT2G25970			KH domain-containing protein (...		Lus10004445 [exp]	12.5	0.7601
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	16.1	0.7414
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	18.1	0.7633
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	22.6	0.7545
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	25.9	0.6409
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	35.6	0.7256

Compare expression of checked genes

Lus10009830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.