Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 54 / 1e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 41 / 0.0002 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040941 [exp] 304 / 4e-105 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 190 / 5e-61 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 184 / 2e-58 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 109 / 2e-29 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 103 / 3e-27 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 103 / 6e-27 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 97 / 1e-24 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015120 [exp] 96 / 4e-24 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 91 / 3e-22 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 93 / 3e-23 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 90 / 4e-22 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 67 / 3e-13 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 61 / 5e-11 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 59 / 2e-10 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 57 / 7e-10 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G090400 [exp] 50 / 2e-07 AT4G23930 166 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.001G098100 [exp] 49 / 8e-07 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G141200 [exp] 48 / 1e-06 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.016G142200 [exp] 47 / 4e-06 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein CL0652 [flax] [poplar] S24e_L23_L15e PF05162 [flax] [poplar] Ribosomal_L41 Ribosomal protein L41
Representative CDS sequence Show only first row Show all	>Lus10009831 pacid=23180151 polypeptide=Lus10009831 locus=Lus10009831.g ID=Lus10009831.BGIv1.0 annot-version=v1.0 ATGATGATGAAGAGCAGCAGGAGTCCGGCTGTCAGAGTTTGCTGCATATCCGCCACGGTGGTCGTCGTCATCACAGCTATCGTTTTAGTGACACTCGCCT TCACAGTTTTCAAGCCCCATGACCCGGAGGTGGTACTGTACCCGGTCGGGTTGGCCAAAATCCAAATGGAGGATTTCATCGCTAAGGACAACGTCACTAG CGAGATGATCATGAGCGTTCGCAACAGAAATTACGCTAGCTTCCGATTCGAGAACTCGACTAGTAGCATCATCTACGACAGGGAGGAAGTTGGTGTGGTT CCCATCCCGGCAGGCAAAATGATGGCTCGGTCGGTGATGAACATCACGTCTTTAGCCACTTTGATGGTGGGTAAGTTGAGAGCCAATCCCAAGGCGATCA ACGACATTTTGGGCGGGAGTTTGAACTTTACCGCCAAGGTGACGATGCACGGGAAGATGTCGATGATGAAGCAGACGATCAAGAAGCAAGCTACCTCATC CGCCAAGTCCATCGGGACCAATGCTGTCGACGGGGCCAAGGTAGCCGACGACAACACCGTTGTAGTTCCTTGGGCCATTGCAGTCGGGCTCGGGTTTATC CCTGTCAAAACAGAGAAAAGAGGAGAACCGGAGCTTGAGGACTTCATCGCGATGAGGGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGC GCCGAAAGATGAGACAGAGATCGAAGTAG
AA sequence Show only first row Show all	>Lus10009831 pacid=23180151 polypeptide=Lus10009831 locus=Lus10009831.g ID=Lus10009831.BGIv1.0 annot-version=v1.0 MMMKSSRSPAVRVCCISATVVVVITAIVLVTLAFTVFKPHDPEVVLYPVGLAKIQMEDFIAKDNVTSEMIMSVRNRNYASFRFENSTSSIIYDREEVGVV PIPAGKMMARSVMNITSLATLMVGKLRANPKAINDILGGSLNFTAKVTMHGKMSMMKQTIKKQATSSAKSIGTNAVDGAKVADDNTVVVPWAIAVGLGFI PVKTEKRGEPELEDFIAMRAKWKKKRMRRLKRKRRKMRQRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	0	1
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	2.8	0.9020
AT1G69960		PP2A	serine/threonine protein phosp...		Lus10004252 [exp]	3.5	0.8713
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	4.1	0.9079
AT4G04190			unknown protein		Lus10020577 [exp]	4.9	0.8539
AT1G70350			unknown protein		Lus10013008 [exp]	4.9	0.8895
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	6.0	0.8906
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10027801 [exp]	8.9	0.8627
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	10.0	0.8360
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	10.2	0.8443
AT1G15420			unknown protein		Lus10007894 [exp]	10.6	0.8650

Compare expression of checked genes

Lus10009831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.