Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11110 90 / 4e-23 RING/U-box superfamily protein (.1) AT3G10910 81 / 2e-19 RING/U-box superfamily protein (.1) AT1G23980 79 / 1e-17 RING/U-box superfamily protein (.1) AT1G72200 78 / 3e-17 RING/U-box superfamily protein (.1) AT5G05280 75 / 4e-17 RING/U-box superfamily protein (.1) AT5G27420 77 / 6e-17 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT3G18930 75 / 5e-16 RING/U-box superfamily protein (.1.2) AT3G05200 74 / 1e-15 ATL6 RING/U-box superfamily protein (.1) AT3G48030 73 / 2e-15 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G27940 71 / 2e-15 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040942 [exp] 277 / 2e-96 AT3G11110 109 / 1e-30 RING/U-box superfamily protein (.1) Lus10002194 [exp] 82 / 4e-19 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10037490 [exp] 82 / 1e-18 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10006493 [exp] 79 / 8e-18 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10016163 [exp] 77 / 2e-17 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10031515 [exp] 76 / 2e-16 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10022743 [exp] 73 / 2e-16 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10036466 [exp] 76 / 3e-16 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 75 / 5e-16 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071000 [exp] 122 / 7e-36 AT3G11110 122 / 3e-36 RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 80 / 3e-18 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 80 / 3e-18 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.006G144200 [exp] 77 / 7e-18 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 78 / 1e-17 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 77 / 2e-17 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 76 / 3e-17 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 75 / 7e-17 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 73 / 1e-16 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 76 / 2e-16 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009832 pacid=23180201 polypeptide=Lus10009832 locus=Lus10009832.g ID=Lus10009832.BGIv1.0 annot-version=v1.0 ATGGCTTCGACATCATCGTCGTCATTGAAAGAGTCCCGACCAGACCACTCGCACTTCACTGAGCTAGAGGACCACCAGTTCCAGATCCGAGGCAGAACAG TCTTCTTCGCCATCCTAACCTTTGCACTCGTTGTATTCATTGTCCTCCTCCTCCTCTGTACTCGCTGGCTCTACCGTTACCGGCAACGCCGAAACGGACT CTCCCACGCTCCCCGCTCATCCGACGGGAATCCGCAATACTGCCGTGGGCTTGACGCGCTTACAATCGCTGCCATACCCATTACCCTACACTCCTCCTCC GCAATAATGGAGTGCTGTATTTGCCTAGGCACGTTTGAAGACGGGGACAAGGTCAAGTCCTTGCCACGTTGTCACCATTGTTTCCACTCGGAGTGTGTGG ACCGTTGGCTCCTCGCCCACTGTGATTGCCCACTCTGTAGAGCTTCAGTAGTTGTTGACCCGGTCCGCGAGCAAGTAGTCATAGTTGTTGACTCTGCGAT CAGTACCAGATCAGGTGGTCTTGATGTCTGA
AA sequence Show only first row Show all	>Lus10009832 pacid=23180201 polypeptide=Lus10009832 locus=Lus10009832.g ID=Lus10009832.BGIv1.0 annot-version=v1.0 MASTSSSSLKESRPDHSHFTELEDHQFQIRGRTVFFAILTFALVVFIVLLLLCTRWLYRYRQRRNGLSHAPRSSDGNPQYCRGLDALTIAAIPITLHSSS AIMECCICLGTFEDGDKVKSLPRCHHCFHSECVDRWLLAHCDCPLCRASVVVDPVREQVVIVVDSAISTRSGGLDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	0	1
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	5.9	0.7429
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	13.7	0.7047
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10022436 [exp]	20.6	0.6896
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10019314 [exp]	23.0	0.6591
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	23.4	0.6704
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10001896 [exp]	23.4	0.6940
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	28.6	0.6765
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	28.6	0.6708
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	31.9	0.6813
AT5G42200			RING/U-box superfamily protein...		Lus10021842 [exp]	33.1	0.5330

Compare expression of checked genes

Lus10009832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.