Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040943 [exp] 238 / 9e-82 AT4G23180 39 / 9e-04 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007504 [exp] 132 / 6e-40 AT3G22040 42 / 3e-05 Domain of unknown function (DUF26) (.1) Lus10028980 [exp] 129 / 1e-38 AT3G21945 39 / 9e-04 Receptor-like protein kinase-related family protein (.1) Lus10026810 [exp] 44 / 9e-06 AT1G63600 41 / 1e-04 Receptor-like protein kinase-related family protein (.1) Lus10022828 [exp] 43 / 2e-05 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10028026 [exp] 42 / 3e-05 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Lus10011894 [exp] 41 / 6e-05 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10028018 [exp] 41 / 6e-05 ND 39 / 5e-04 Lus10020814 [exp] 41 / 0.0001 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 40 / 7e-05 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G026350 [exp] 40 / 0.0003 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10009833 pacid=23180176 polypeptide=Lus10009833 locus=Lus10009833.g ID=Lus10009833.BGIv1.0 annot-version=v1.0 ATGGCTCGCCTAGTGATCATGTTGACAGTATTCGTCCTCGCATTCGGGTTATTCTGCGGACCAGTCAACACCTCCGACGGCGAGGATAACTCTTCTGCCG CAGCACCATCACCGCAGACCACTACTAAGCCTACGACTTCGGGAGTTGTCTGCGACAAGACGAATTACACAAACGTGTACCCGACCAACAGTTACGTGAA GCATGTCCTTGAGGAGCTGAGCGAGGAAGTGAGCAATAGCAAGGGTTACGCCAAGCTCATCAAGTTCCCCGAAATCGACCGGCCGATTATGTCTGGTCAG GGGACATGCAAGAAGAACATGACCCAGACGGAATGCGCCAAGTGTATTAAGGACGGCGTGAAGATTGTGCTTGATAGATGTCCGCAGCGGGTTGGAGCCC AGTTCACTGCCGCCAAGTGCCAACTGAGGTACGACGTTTTCCATGCCTAG
AA sequence Show only first row Show all	>Lus10009833 pacid=23180176 polypeptide=Lus10009833 locus=Lus10009833.g ID=Lus10009833.BGIv1.0 annot-version=v1.0 MARLVIMLTVFVLAFGLFCGPVNTSDGEDNSSAAAPSPQTTTKPTTSGVVCDKTNYTNVYPTNSYVKHVLEELSEEVSNSKGYAKLIKFPEIDRPIMSGQ GTCKKNMTQTECAKCIKDGVKIVLDRCPQRVGAQFTAAKCQLRYDVFHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10009833 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	4.5	0.9396
AT2G39440			unknown protein		Lus10040607 [exp]	5.3	0.9290
					Lus10034871 [exp]	6.0	0.8784
AT5G21910			unknown protein		Lus10038069 [exp]	8.5	0.9209
					Lus10003893 [exp]	9.9	0.9230
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	12.7	0.9093
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10043366 [exp]	13.4	0.8579
					Lus10039496 [exp]	13.6	0.9114
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10015764 [exp]	13.9	0.8643
					Lus10034352 [exp]	14.7	0.9099

Compare expression of checked genes

Lus10009833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.