Plant FIBer expression Database

Lus10009835 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05520 625 / 0 Outer membrane OMP85 family protein (.1)
AT3G11070 603 / 0 Outer membrane OMP85 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040946
[exp]
1001 / 0 AT5G05520 627 / 0.0 Outer membrane OMP85 family protein (.1)
Lus10007514
[exp]
743 / 0 AT5G05520 600 / 0.0 Outer membrane OMP85 family protein (.1)
Lus10017441
[exp]
743 / 0 AT5G05520 597 / 0.0 Outer membrane OMP85 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G071800
[exp]
658 / 0 AT5G05520 626 / 0.0 Outer membrane OMP85 family protein (.1)
Potri.010G185600
[exp]
647 / 0 AT5G05520 651 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0193 MBB PF01103 Omp85 Omp85 superfamily domain
Representative CDS sequence
>Lus10009835 pacid=23180192 polypeptide=Lus10009835 locus=Lus10009835.g ID=Lus10009835.BGIv1.0 annot-version=v1.0
ATGGCCAACCCCGATGACTTGAAGCCGGGTCCGATGTCCGAAAACCCTAAAAACGACGCAGACGATGTTGAAGACGAGAATGGCGACACCGGATACGAAG
AAGACGCGGAAGATCATGACCTCGACGAGGAAGAAGAGGTTGAACCGGAACCGCGGGATCCAAGAGGGCGAATTCCGCAATCCGCGGTCGGACTGCAAAA
GGCAAAGCTGCAGAACCTCTTCCAGCTGTTGCAGACGCAGAGAGTGCCGCTTCGAGTTCACGATGTGCTCATCAAGGGCAACACGAAGACTAAGGATTAC
CTAATCGAAGCCGAGGTCGCGCTGCTTAAGAACTGCACAACTATGCAGGAGATCCTCGAGGTCTCCAGAGCTGTGAGCTTTAGGCTGCAAGCGCTCGAGA
TATTCGATTCTGTAAATATCACGCTCGACTCCGGTCCTCCGGAGCTCCCTGGGACTTCTAATGTCATCGTAGAGGTCCAGGAGGCTAAATCTAAGACTGG
TGAAATTGGAGCTTACTCAAAGGGCCTGGAGGCTAAAGCTTCAACAATTGAAGGAACATTGAAGTTCAAAAATTTATTTGGCCATGGGGATCTTTGGGAT
GGCTCTTTTGCGTATGGCTGGGATCATTTGGCAGAGGTAAGTGCTGGTGTGCATTTTCCAAGATTCAGAGGATCTTCAATTCCTCTGGATGTCCGCGCAT
TTCTGCTATCCCAAGATTGGCTGGAGTTCTCTTCATTCAAAGAGAGGTCAATGGGTCTTTCTGTTAACTTGCTCTCCACTTGGAACCATGACTTGGTCTA
CAATCTCGGATGGCGTACCTTGATGGATCCTTCACAAATGGCATCCAGGTCAGTGAGGAGACAGCTTGGCCACAGTTTACTCTCATCTTTGAAATATACA
TTCAAGGTTGACAGGAGAAATTCACCTTTGCGGCCAGTCCGGGGATATGCTTTTGCTGCTACCTCTCAAATTGCGGGCCTTGCACCTGATAGTCGGTTCT
TACGTTTCGTACGCCAGGCGGTTGACCTCCGTTATGCCATGCCTCTTGGAATTCTTAATGCTGCACTTAACTTGGGGATCTCTGGCGGTGTTGTTTATCC
ATGGGGGAATGGCTCCTCAAGTATGGCTTCACCTCTCCCCGACAGGTTCTTTCTAGGTGGGAATTCATCTCCAATCTGCAACCTGGGAGGCCCAACAACG
TTATGGGGATATAGAACCCGGGGACTTGGTCCTATAGAGCCAAGAAGGCATCCAAACAGCGATGCTGATGATGAGAATGCTCATCCTGGAGTTGATTATA
TCGGAGGAGATCTTGCTGTTACTGCTTTTGCAGATCTTTCTTTTGATTTGCCACTGAAATGGTTCAGAGCAAGAGGAATTCATGGGCACGTATTTACATC
GGCTGGTAATCTTGAGAAATTAACACAAAATGCGCACAAAGATTTCTCTTTGCAGAAGTTTGCGTCCTCCTTTCGGACCTCAGTGGGTGCTGGGATTGTT
ATTCCAATGCACCCATTCCGTCTTGAGCTGAACTACTACCACAAGTTGAAGAGATATGAACATGACCGTGGGAAGCCCGGATTCGGGGTGACTTTCTCTG
CATCTTCATAG
AA sequence
>Lus10009835 pacid=23180192 polypeptide=Lus10009835 locus=Lus10009835.g ID=Lus10009835.BGIv1.0 annot-version=v1.0
MANPDDLKPGPMSENPKNDADDVEDENGDTGYEEDAEDHDLDEEEEVEPEPRDPRGRIPQSAVGLQKAKLQNLFQLLQTQRVPLRVHDVLIKGNTKTKDY
LIEAEVALLKNCTTMQEILEVSRAVSFRLQALEIFDSVNITLDSGPPELPGTSNVIVEVQEAKSKTGEIGAYSKGLEAKASTIEGTLKFKNLFGHGDLWD
GSFAYGWDHLAEVSAGVHFPRFRGSSIPLDVRAFLLSQDWLEFSSFKERSMGLSVNLLSTWNHDLVYNLGWRTLMDPSQMASRSVRRQLGHSLLSSLKYT
FKVDRRNSPLRPVRGYAFAATSQIAGLAPDSRFLRFVRQAVDLRYAMPLGILNAALNLGISGGVVYPWGNGSSSMASPLPDRFFLGGNSSPICNLGGPTT
LWGYRTRGLGPIEPRRHPNSDADDENAHPGVDYIGGDLAVTAFADLSFDLPLKWFRARGIHGHVFTSAGNLEKLTQNAHKDFSLQKFASSFRTSVGAGIV
IPMHPFRLELNYYHKLKRYEHDRGKPGFGVTFSASS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05520 Outer membrane OMP85 family pr... Lus10009835
[exp]
0 1
AT5G20300 Toc90 translocon at the outer envelo... Lus10027712
[exp]
2.4 0.8778
AT2G05170 ATVPS11 vacuolar protein sorting 11 (.... Lus10012332
[exp]
8.4 0.8715
AT4G34980 SLP2 subtilisin-like serine proteas... Lus10034496
[exp]
8.5 0.8719
AT1G63700 EMB71, MAPKKK4,... YODA, MAP KINASE KINASE KINASE... Lus10014976
[exp]
8.7 0.8930
AT1G65440 GTB1 global transcription factor gr... Lus10011344
[exp]
9.4 0.8861
AT4G39080 VHA-A3 vacuolar proton ATPase A3 (.1) Lus10017490
[exp]
10.2 0.8753
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Lus10002178
[exp]
12.2 0.8457
AT5G64740 PRC1, IXR2, E11... PROCUSTE 1, ISOXABEN RESISTANT... Lus10006161
[exp]
13.4 0.8667
AT5G21160 LA RNA-binding protein (.1.2.3... Lus10041277
[exp]
13.6 0.8720
AT1G53300 TTL1 tetratricopetide-repeat thiore... Lus10042854
[exp]
13.8 0.8750

Lus10009835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.