Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05510 359 / 2e-119 Mad3/BUB1 homology region 1 (.1) AT2G33560 107 / 3e-25 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT2G20635 77 / 7e-15 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040947 [exp] 905 / 0 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10013199 [exp] 105 / 2e-24 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 103 / 1e-23 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10017714 [exp] 75 / 5e-14 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071900 [exp] 263 / 4e-81 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.010G185500 [exp] 248 / 3e-75 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.005G258300 [exp] 100 / 5e-23 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.002G002900 [exp] 99 / 4e-22 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.007G139000 [exp] 85 / 2e-17 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [flax] [poplar] Mad3_BUB1_I Mad3/BUB1 homology region 1
Representative CDS sequence Show only first row Show all	>Lus10009836 pacid=23180202 polypeptide=Lus10009836 locus=Lus10009836.g ID=Lus10009836.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCGCCGAAGATCTCTTCTCATCCGTCGTCTCCGACATTAAATCCTACCCTGGCAAGGATCATTTGCTTCCTTGGCTCCGGGGCATAAAAA AAGTGACCGAGCTTCTGCCTCCAAATCTTCTGAAAGCAAAGCTACCTCGATTTTTGCAAAAATGCGCTCAGACATTCGAGTCGGATAAGCGCTACAAGAA CGATCTTCGCTACCTTCGTGTTTGGTTGCAGCTGATGGACTATGTGGATGACCCAAGAGTGCTATTGAGAACCATGGAGAAGAATCACATTGGGATGAAG AGGTCACTGTTTTACCAGGCGTATGCTTTGTATTATGAGAAGATGAAGAAATTTGAGGATGCTGAGAAGATGTACCATTTGGGTGTGCAGAACCTCGCTG AGCCTGTTGATGAGTTGCGGAGATCATATGAACAGTTCCTCAATCGAATGAAAAGACACATGAACAAAAAATCCCAGACCCTGAGAAGTGACAGAAGACG CCCGCCACTTGTGAAGACTGAAGAAAACAATGAGATTGCATGTGGGAGCTCCCGAAATGTGAAGCCCTTGGAGGAATCAAACTTAGTTTGTAAAATGAAA TGTGTGGACAAGAATGCAGAGGATACAAAGGAGGCCTTGGGAAGATATGCTGCTAGCAGACTGAAGGAAAACCATAGCTCAAATGGTGGTTTTGAAATTT TTGTAGATGAACACATGGAGGGAGTAACCAACTCATTGGAGAAAGCTCAAGCTAGCCAGACCAGCAAGAAGCCTCTTCAGATATTTATTGATGATGAAGA ATCTGAAGAGAATGAGAAAGACAGCGTAGATCAAAATGAGGCTGAGGTTGGTGCATTTGTGTTCCCATGTCCAAAGGATGTATCATCTGAAGACAAAAAT GATAGTATGGATGGCCAGAGGTCACCACAAAATAAACTTATTAGGGAGGATACAGTTGTTCACCGATTTGTTGGCTCCACCATCTTGGATGAACCAGCGG TGGAGAATGTTTGTCACCATGGGTTAGTTGATCCCACAGTCAACTTGAAAGAGGCCATGGAAGACATCAATAACATGTTTGGGAAGCCAATAGATTTTGT TAGGGCCAGGAGAGCAAAGCAGCAGGGTAAAAAACAAGCACTTGGTGGGTTTTCTATACTGCCGGATAATGATTTGGATCATAGACAAAGCCAGACAACC AAGGAACAAGAAGTCAGTGCATTCTCTATACTACCTGATGAAGAGTTTGATCTTCAAGAAAGCCATCCGGCAAAGAGACAAGAACTCGGAGGATTCTTGA TACTGCCTGATGATGATGATGTTGTTGATCTTAAACAAAGCCAGCAAGGGAAGAAGCAAGAACTCGGTGGGTTCTCGATACTTCCCGACGATGATCTCGA TCATAAACAAAAAAGGAAGCAGCCACATAAATCTTCATCCGATGCAAGAGGATCAGAGTTGTTCGAGCCAACTGTGTTCACACAGGAGGCAATGGATGAC ATCAACAAGTTGTTTGGCATGCCATTGGACTTTTAG
AA sequence Show only first row Show all	>Lus10009836 pacid=23180202 polypeptide=Lus10009836 locus=Lus10009836.g ID=Lus10009836.BGIv1.0 annot-version=v1.0 MAAAAEDLFSSVVSDIKSYPGKDHLLPWLRGIKKVTELLPPNLLKAKLPRFLQKCAQTFESDKRYKNDLRYLRVWLQLMDYVDDPRVLLRTMEKNHIGMK RSLFYQAYALYYEKMKKFEDAEKMYHLGVQNLAEPVDELRRSYEQFLNRMKRHMNKKSQTLRSDRRRPPLVKTEENNEIACGSSRNVKPLEESNLVCKMK CVDKNAEDTKEALGRYAASRLKENHSSNGGFEIFVDEHMEGVTNSLEKAQASQTSKKPLQIFIDDEESEENEKDSVDQNEAEVGAFVFPCPKDVSSEDKN DSMDGQRSPQNKLIREDTVVHRFVGSTILDEPAVENVCHHGLVDPTVNLKEAMEDINNMFGKPIDFVRARRAKQQGKKQALGGFSILPDNDLDHRQSQTT KEQEVSAFSILPDEEFDLQESHPAKRQELGGFLILPDDDDVVDLKQSQQGKKQELGGFSILPDDDLDHKQKRKQPHKSSSDARGSELFEPTVFTQEAMDD INKLFGMPLDF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10009836 [exp]	0	1
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	1.7	0.9523
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	2.8	0.9495
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	4.9	0.9477
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10033417 [exp]	6.2	0.9224
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	7.2	0.9464
					Lus10030682 [exp]	8.7	0.9190
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	9.4	0.9319
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	9.6	0.9048
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	10.7	0.9439
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	10.8	0.9299

Compare expression of checked genes

Lus10009836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.