Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05450 681 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G71370 586 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G71280 409 / 2e-137 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 252 / 8e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 233 / 5e-68 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 221 / 6e-63 DEA(D/H)-box RNA helicase family protein (.1) AT1G77030 209 / 6e-58 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT5G60990 195 / 1e-55 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 195 / 3e-53 DEA(D/H)-box RNA helicase family protein (.1) AT5G51280 185 / 8e-51 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040952 [exp] 540 / 0 AT5G05450 640 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040949 [exp] 273 / 2e-88 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10027240 [exp] 251 / 6e-75 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 249 / 2e-74 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 248 / 7e-74 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007574 [exp] 226 / 8e-64 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007517 [exp] 209 / 3e-63 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10012172 [exp] 223 / 6e-63 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10017438 [exp] 202 / 4e-61 AT5G58530 132 / 1e-37 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073100 [exp] 775 / 0 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 244 / 1e-72 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 237 / 9e-70 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 222 / 4e-63 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 204 / 3e-59 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 202 / 3e-58 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 193 / 6e-55 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 194 / 6e-53 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.008G072200 [exp] 180 / 1e-52 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.005G241300 [exp] 191 / 4e-52 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10009838 pacid=23180152 polypeptide=Lus10009838 locus=Lus10009838.g ID=Lus10009838.BGIv1.0 annot-version=v1.0 ATGGAAGACTCCCAGAACTCAAACAGAGCGTTAACCAGCACCCGCTTCTCCGACCTAAATCCACCGCTCTCCCTTCCGGTTCTCGATGCCCTTACAGAAG GCGGCTTCGATTACTGCACGCCTGTTCAAGCTGCGACCATTCCTTTATTATGCAGCTACAAGGACGTAGCCGTCGACGCTGCCACCGGTTCCGGCAAAAC CCTGGCTTTCGTTGTTCCTCTCGTCGAGATTCTCCGCCGAACTTCCCCTGCTCCCAAACCTCACCATGTGATGGGGATAATCATATCTCCTACTAGGGAG CTGTCGTCGCAAATATATAATGTGGCACAACCTTTCATCGCTACCTTATCGAATTTTAAGCCTATTCTCCTTGTTGGAGGTAGGGATGTGAAGGCTGATG TGAAGATAATAGAAGAAGAAGGGGCTAATTTATTGATTGGGACACCTGGTAGGCTGCATGATATAATGGAACGCGTTGATGACTTGGATTTTCGGAATCT TGAGGTCTTGATTCTAGATGAGGCTGATAGACTGTTGGATATGGGATTCCAGAAGCAGTTAAACGCCATCATATCCCGTTTGCCAAAGCTTCGCAGGACT GGTCTTTTCTCAGCTACGCAGACTGAGGCAGTTGAAGAGTTGGCCAAAGCTGGACTAAGGAATCCCGTAAGGGTTGAAGTTCGCGCTGAAGAGAAGGCAT TAAATGATTCATCTTCATCTCAGCATTCAGCTTCTTCCAAGACACCATCTGGACTTGTCCTTGAGTATTTGGAGTGTGAAGCGGATAAAAAACCATCAGA ACTTGTGGATCTTCTTCTTAAGAATAAGTCAAAGAAGATTATAATATACTATATGACTTGTGCCTGCGTGGATTACTGGGGAGTCGTTCTTCCGCAGCTT TCCGCTTTAAAAGGCCTCTCTTTGATTGCTCTTCATGGGAAGATGAAACAGAATGCAAGAGAAAAAGCATTGGCAAACTTTACATCCCTTACAAGTGGTG TTCTTCTGTGCACTGATGTTGCAGCACGTGGTCTTGATATCCCTGGTGTTGATTGTATAGTTCAGTATGATCCCCCACAAGATCCCGATGTATTCATCCA CAGAGTCGGTCGAACTGCCCGTTTGGGCAGACAAGGATATGGCATTGTTTTTCTCTTACCCAAGGAGGAAGCTTATGTAAGATTTCTTCAGAAAAGAAGG GTTCCTCTCCAAGAAAGGGAACCTACCGATGATGCTGTAGATGTTGTGTCTGAGATACGGTCTGCAGCAAGAAAGGATCGTGATGTCATGGAAAAGGGTC TGACAGCGGTGAAAGAACTCGAGATTGGGAAATTGGGCATGGGATTTGGCCTATTGCAGCTTCCTTCAATGCCTGAAGTAAAGCACTGCTCTCGCTCCAT GGAGGGTTTCATTCCTGTTGAAGATCTCAACTTGGAGGAGATAAAATTTAAATCCATACTCCGGGGGTTCCGCGTCCCGATCGACGAGCGTGATTTGTCA ATGGACGGTAAGTACCTAGGAGAGGTGCAGGAGATTGTCGGGTCAAGTGGTAAGATAACGCTGCCGTTGGTCTTAATCGGAGGCAAGTGCTTCGTGGGGG CAGACGAAATCAGGGAGCTCCACGAGTGCGGCGAGCTGAAGAAGATGATCGGGGGGTTGCCGGTTGTTGGAGCGTCGAACGAATGCGAAGCGTGTGGAGG AATGAGATTCGTGATGTGCGAAGAGTGCAGCGGTAGCCACAAGATCTTCTCGGAAAAGCAAGGGTTCCGGAGTTGCACCACCTGTAATGTCAATGGTTTG GTTCGCTGCCCGGATTGCTACCCGGCTGGCCGACGACGGATGTCAATCGCATAA
AA sequence Show only first row Show all	>Lus10009838 pacid=23180152 polypeptide=Lus10009838 locus=Lus10009838.g ID=Lus10009838.BGIv1.0 annot-version=v1.0 MEDSQNSNRALTSTRFSDLNPPLSLPVLDALTEGGFDYCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRTSPAPKPHHVMGIIISPTRE LSSQIYNVAQPFIATLSNFKPILLVGGRDVKADVKIIEEEGANLLIGTPGRLHDIMERVDDLDFRNLEVLILDEADRLLDMGFQKQLNAIISRLPKLRRT GLFSATQTEAVEELAKAGLRNPVRVEVRAEEKALNDSSSSQHSASSKTPSGLVLEYLECEADKKPSELVDLLLKNKSKKIIIYYMTCACVDYWGVVLPQL SALKGLSLIALHGKMKQNAREKALANFTSLTSGVLLCTDVAARGLDIPGVDCIVQYDPPQDPDVFIHRVGRTARLGRQGYGIVFLLPKEEAYVRFLQKRR VPLQEREPTDDAVDVVSEIRSAARKDRDVMEKGLTAVKELEIGKLGMGFGLLQLPSMPEVKHCSRSMEGFIPVEDLNLEEIKFKSILRGFRVPIDERDLS MDGKYLGEVQEIVGSSGKITLPLVLIGGKCFVGADEIRELHECGELKKMIGGLPVVGASNECEACGGMRFVMCEECSGSHKIFSEKQGFRSCTTCNVNGL VRCPDCYPAGRRRMSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	0	1
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	3.9	0.7036
AT5G13560			unknown protein		Lus10040337 [exp]	4.7	0.6823
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	10.2	0.6211
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10034186 [exp]	21.4	0.6306
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10028139 [exp]	23.1	0.6677
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	23.4	0.6600
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009830 [exp]	25.9	0.6409
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	28.6	0.6403
AT3G15180			ARM repeat superfamily protein...		Lus10027294 [exp]	33.7	0.6490
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	38.7	0.6201

Compare expression of checked genes

Lus10009838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.