Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42670 1282 / 0 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT5G20420 1252 / 0 CHR42 chromatin remodeling 42 (.1) AT1G05490 332 / 3e-94 CHR31 chromatin remodeling 31 (.1) AT3G24340 321 / 1e-91 CHR40 chromatin remodeling 40 (.1) AT2G21450 281 / 4e-80 CHR34 chromatin remodeling 34 (.1) AT2G16390 281 / 1e-79 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT1G08600 115 / 1e-25 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT5G63950 111 / 2e-24 CHR24 chromatin remodeling 24 (.1) AT5G44800 99 / 2e-20 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G19210 84 / 4e-16 ATRAD54, CHR25 homolog of RAD54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040956 [exp] 2255 / 0 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10003003 [exp] 315 / 7e-90 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 316 / 4e-89 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10042070 [exp] 294 / 2e-82 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10041963 [exp] 288 / 1e-81 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 260 / 6e-72 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10040136 [exp] 230 / 6e-62 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10032785 [exp] 160 / 3e-39 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10003572 [exp] 154 / 3e-37 AT1G08600 1560 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073500 [exp] 1149 / 0 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.010G183832 [exp] 679 / 0 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.014G050200 [exp] 370 / 9e-109 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.009G120700 [exp] 284 / 1e-80 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183766 [exp] 210 / 8e-62 AT5G20420 176 / 9e-51 chromatin remodeling 42 (.1) Potri.004G159000 [exp] 215 / 2e-57 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183799 [exp] 185 / 7e-52 AT5G20420 154 / 6e-42 chromatin remodeling 42 (.1) Potri.007G102800 [exp] 115 / 1e-25 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G066600 [exp] 110 / 3e-24 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.013G048500 [exp] 110 / 4e-24 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009840 pacid=23180199 polypeptide=Lus10009840 locus=Lus10009840.g ID=Lus10009840.BGIv1.0 annot-version=v1.0 ATGCAATTAACTTCAACAGCATTTGAGGCCTTCTGTTGTGGATCGTGGCGAGGTGTGAGGCAAATAGAAATTAGGGCTGGGACTATGATCACACATTATG GAGATCACCATCACCTTGGAGTTGCAGAAAAAGGTCCATTGCCAAATCTTCGAGTAAGGTCAAGGCAAGCAACTGCATCTGATTGCATTTGCTTCCTAAG GCCTGGCGTTGATGTCAATGTGCTTTCATCAGCTCTACAACATGGAGATAAGCCAAAGACTAAAGATCCTGTGTGGGTAGATGGTAAAATAAAATCGATA GCGAGGAAGCCACATGATGGCTCTCAGTGTTCATGCAAGTTTTCTGTTAAACTCTATGCAAACCAAGGAGTTATTGGGATGGAGAAAGCAACACTTAGCA AAATAACTGATGAAGTAGGAATTGACAAGATCTATGTTCTTCAAAAGCTTGATAATAGTCCTTGCCAAGGCCAATTCTATCGCTGGGGTTACTCGGAAGA CTGTGTTGTAGCACAAAGAACTAAACTTTTTCTGGGGAAGTTCTGTCATGAGCTGACGTGGCTACTTGCAACATCAGTTCTCAAGCACATTGCTTTTGTT GTAATGTCACTGCAAAACAAGATCATATATCAAACTTGGGCTTATGATGAGGCTGACAACACCTCCAAAACTTATGTGCAACTGAATTGTATTAATTTCA AGGTCGAGAACGAGATTTTGACACCGGTTCTTAGACAACACATTCCTGATGATTCTATAAATGAAGCAGTTCCTTCATCTGAACTAGTTGTTGTTAATCC TCCTGAGCCAGTTACTGAAGATTCAAACTTGAAACTTTGGAGGTCTGGACGTAGAAGGGTTCAACCAGATCGGTTCATTGGAGGTGACAACATTTCTGCA GATGAGGACCCTGGTTGGGTTAGACAGATGCCATACAAGACAAATAGATGGAAGGAGGAGGATGATGATGATGATGATGAGATGGATGTGCCACTTTCGA AGCTTTTTCGAAAAAACCAAGCTCGAGGGGAGTTTAGTAATTTTAAACCCCTAGAGGATGGTGAAGATGGTGAGACAGGGACTTCAAAGGCAAGAAGAGG GAGAGGAATTCGAAAAACCGGATTCTCCACCTCTCATCCTCCTCCAAAGACTTCTGAGAATCATCCCAGAGAGAAGGATGACGTGTCATTTGGGTATTAC AGCAAGCGAGGTACTTCAGGTTCACAAAGGAAGAGTTTTGTTTCTTTCAGTACAAGGAATCCTAGTTTTGAGGCTGAGGAAGACCTGGGGTTTCAAAGTG GATGGGGCTCAATATCTTTTGGTAGGAAATATTCTTCAAATGTAAGATACAGATCTTTCAGATCCAGGAAAGATAATAAGTTTGGAGAACAAAGGACATT CAAGAAGACAGCATTAAGTGCTGGTGCATACAACAAGCTTATAAATTCATACATGAAGAACATTGATTCAACTATCTCGTCCAAAAGTGAGACACATATC ATTGACCAGTGGGAGCGATTTAAAGCCAAAGGCGACGAGAGGCAGACTAAAAAAACTGACAAGTTTGCAGAAGAGGATGATGGAGAGCTGTCGGAAACCG AGATGTTATGGAGAGAAATGGAGCTTTGCTTGGCATCAGCATATATCCTTGAAGAAGATCAGGATCGAGCTTCCACAAAGAACGTGGAAAACGAGGAAGG GAGTAACGACTGCCTCCACGCATACAAACTGGATGAGGAAATTGGGATTATATGTACGATATGTGGCTTCGCCTCCATTCCTCGAATCCAGAACGGAAGC CTAACGATGGAGATGATTCAGAAGGTCAAGGCAGATGGGGATGAGGAAATAAAATTGTTCACCACTGATCACAATACCTACAATGAAGAAGCAGCCTTTT CAGCTGATCAGGAAAACGTATGGGCTTTAGTCCCACATATTAAAAGCAAGCTGCATTTGCACCAGAAGAAGGCATTTGAGTTTCTATGGAAGAACACTGC TGGCTCAATGATCCCAGCAGAAATGGTGAAAGCATCAAAGAAAATTGGTGGTTGTGTCGTCTCCCATACTCCGGGAGCTGGTAAAACTTTCCTCATCATT GCATTCCTCTCTAGCTTCCTCAGGTTGTTCCCAAACAAGAGGCCATTAGTCCTTGCTCCGAAGACTACTCTCTACACTTGGTACAAGGAATTTATCAAGT GGGGGATTCCCATCCCGGTTCACCTTATCCACAGGCGCAAGACTTATAGGCTTTCGAAGCAAGGCACTGTGAAATATGGAGGGGGAGGAGGACCGAAGCC GAGTCAGGATGTTATGCCTATCCTTGACTGCTTAGAAAAGATTCAAAAGTGGCATGCTCAGCCAAGTGTTCTTGTCATGGGCTACACTTCTTTCCTGACA TTGATGCGCGAAGATTCGAAATTTGCTCACAGGCAGTACATGGCTAAAGTGTTGAGGGAAAGTCCAGGGCTCCTCATTTTGGATGAAGGGCATAACCCAA GAAGCACAAAATCCAGGTTGAGAAAGGTGTTGATGAAGGCCGATACAGATCTCCGAATACTTCTATCCGGAACTTTATTCCAGAACAATTTCGTCGAGTA TTTCAACACACTTTGCCTTGCTAGACCAAAGTTCATTAGAGAAGTCTTGAAGAAGCAAGACCCCAAGTTCAAGGCAAAGAGACGGCCTCAAAAGGCTCGA CATCTACTCGAAGCTAGAGCCAGGAAACTTTTCATAGACAAAATTGCAAGCAAGATCGATTCGGATGTGCCAGAAGAAAGAATGGAGGGTCTGAATGTGC TGAGGAAAATGACCAATGGGTTCATTGATGTGTATGAAGGTGGAGCTTCTGATGGCCTTCCGGGTTTGCAGATTTATACTATATTGATGAATTCGACTGA TATACAAAACGAGATTCTGAACAAACTTCATGACATTATGGCTACATACCCTGGATACCCACTGGAGCTGGAGCTTATGATTACACTTGTCTCTATTCAC CCATGGTTGGTTAAAACATCAAACTGTGTCCATAAATTCTTCAACATCCCAGAACAGGTGGAGCTTGAGAAGTTCAAGTTTGATTTCAAGAAAGGCTCAA AGGTCATGTTTGTTCTGAACTTAGTCTACAGAATAGTCAAGAAGGAGAAAGCTCTCATCTTTTGCCACAATATCGCTCCCATTACCCTCCTGACCGAGCT GTTCGAGAATATATTCGGATGGCAGAAGGGCAGAGAGATTATGATACTCACAGGTGATCTTGAGCTTTTTGAAAGAGGGAGGATAATAGACAAGTTTGAG GAGCCAGGTGGCCACTCTAAGGTTCTACTCGCATCACTCACAGCTTGTGCTGAGGGAATCAGCCTCACAGCAGCTTCAAGAGTCATCCTAATGGACTCCG AGTGGAATCCTTCGAAGACGAAGCAGGCCATTGCTCGGGCTTTTCGTCCAGGCCAGCAGAAGGTGGTGTATGTGTATCAACTCCTCGCGACTGGTACGCT TGAGGAAGATAAGTACAGGAGAACAACATGGAAAGAGTGGGTTTCCTGTATGATATTCAGCGAGGCTTTCGTTGAGGACCCTTTGCAGTGGCAAGCGGAG AAGATCGAAGATGATGTTCTGAGGAAAATGGTGGAGGAGGATCGGGTCAAATCGTTTCATATGATCATGAAGAACGAAAAGGCTTCAACGGGTTAA
AA sequence Show only first row Show all	>Lus10009840 pacid=23180199 polypeptide=Lus10009840 locus=Lus10009840.g ID=Lus10009840.BGIv1.0 annot-version=v1.0 MQLTSTAFEAFCCGSWRGVRQIEIRAGTMITHYGDHHHLGVAEKGPLPNLRVRSRQATASDCICFLRPGVDVNVLSSALQHGDKPKTKDPVWVDGKIKSI ARKPHDGSQCSCKFSVKLYANQGVIGMEKATLSKITDEVGIDKIYVLQKLDNSPCQGQFYRWGYSEDCVVAQRTKLFLGKFCHELTWLLATSVLKHIAFV VMSLQNKIIYQTWAYDEADNTSKTYVQLNCINFKVENEILTPVLRQHIPDDSINEAVPSSELVVVNPPEPVTEDSNLKLWRSGRRRVQPDRFIGGDNISA DEDPGWVRQMPYKTNRWKEEDDDDDDEMDVPLSKLFRKNQARGEFSNFKPLEDGEDGETGTSKARRGRGIRKTGFSTSHPPPKTSENHPREKDDVSFGYY SKRGTSGSQRKSFVSFSTRNPSFEAEEDLGFQSGWGSISFGRKYSSNVRYRSFRSRKDNKFGEQRTFKKTALSAGAYNKLINSYMKNIDSTISSKSETHI IDQWERFKAKGDERQTKKTDKFAEEDDGELSETEMLWREMELCLASAYILEEDQDRASTKNVENEEGSNDCLHAYKLDEEIGIICTICGFASIPRIQNGS LTMEMIQKVKADGDEEIKLFTTDHNTYNEEAAFSADQENVWALVPHIKSKLHLHQKKAFEFLWKNTAGSMIPAEMVKASKKIGGCVVSHTPGAGKTFLII AFLSSFLRLFPNKRPLVLAPKTTLYTWYKEFIKWGIPIPVHLIHRRKTYRLSKQGTVKYGGGGGPKPSQDVMPILDCLEKIQKWHAQPSVLVMGYTSFLT LMREDSKFAHRQYMAKVLRESPGLLILDEGHNPRSTKSRLRKVLMKADTDLRILLSGTLFQNNFVEYFNTLCLARPKFIREVLKKQDPKFKAKRRPQKAR HLLEARARKLFIDKIASKIDSDVPEERMEGLNVLRKMTNGFIDVYEGGASDGLPGLQIYTILMNSTDIQNEILNKLHDIMATYPGYPLELELMITLVSIH PWLVKTSNCVHKFFNIPEQVELEKFKFDFKKGSKVMFVLNLVYRIVKKEKALIFCHNIAPITLLTELFENIFGWQKGREIMILTGDLELFERGRIIDKFE EPGGHSKVLLASLTACAEGISLTAASRVILMDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLATGTLEEDKYRRTTWKEWVSCMIFSEAFVEDPLQWQAE KIEDDVLRKMVEEDRVKSFHMIMKNEKASTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10009840 [exp]	0	1
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028740 [exp]	1.4	0.8907
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	4.6	0.8985
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	5.2	0.8733
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	12.0	0.8652
AT3G63430			unknown protein		Lus10014716 [exp]	12.6	0.8637
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	13.5	0.8571
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	14.4	0.8550
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	14.7	0.8595
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	15.0	0.8391
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	18.3	0.8168

Compare expression of checked genes

Lus10009840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.