Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56130 231 / 4e-75 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) AT3G15690 127 / 5e-35 Single hybrid motif superfamily protein (.1.2) AT1G52670 126 / 1e-34 Single hybrid motif superfamily protein (.1) AT5G16390 42 / 0.0003 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) AT5G15530 40 / 0.0007 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040959 [exp] 370 / 1e-128 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10010226 [exp] 290 / 1e-98 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10017424 [exp] 290 / 2e-98 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10011480 [exp] 134 / 1e-37 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1) Lus10023118 [exp] 130 / 5e-36 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074100 [exp] 271 / 3e-91 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.010G183200 [exp] 264 / 2e-88 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.001G172600 [exp] 124 / 8e-34 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2) Potri.003G061400 [exp] 118 / 4e-31 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2) Potri.017G092500 [exp] 44 / 6e-05 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Lus10009843 pacid=23180198 polypeptide=Lus10009843 locus=Lus10009843.g ID=Lus10009843.BGIv1.0 annot-version=v1.0 ATGGATTCCTCCGTCTCTCTCCGCTCCTTCCGCTGCCCTGTACCTACGATTTCAAGCCCTCAGTCACTAGCTGAAAGGACTTGTGCATTTTCTCTCCAGA GTCGTAGCTTCGGCGGGAAGCTTGTTTACTCGCCGGCTAAGAGGAATCTGTCCATAGTATCTTGCGCCAAGACATCTGATTCCTCTATTGCTTCCAAGCC TGCTGATAGTGTCGTGCCAGTTGAATCAGAGAATGATGGTGAACCACGGGGAACTTTTCCCAGTGGGCTTGAAGCTCTGTTACTGGAGGTCTGTGACGAA ACTGAAGTTGCAGAGCTGAAACTTAAGGTTGGTGACTTCGAAATGCATCTGAGGCGTGACATAGGAGCTACGACAGCCCCCTTGTCAAATATTTCACCAG CAATGGCACCACCTATTCCATCTGAACCAATGAATGTAACAGCTCCTGCTATGATACCAGCATCAGCCCCACCACCTCCACCACAATCTTCTGCAAAGAA GTCTGATCCATTCATCAATGTCGCCTTTGGAAAGTCACCGAAGTTGGCTGCCCTGGAAGCTTCTGGAACTACTGGCTACGTTCTCGTGGCTTCTCCAATA GTTGGTTCATACCGGAAGACTCGTACGGTTAAAAAAGGAAAGCCACAGCCTCGTTTCTGCAAAGAGGGTGATATGATTAAAGAAGGACAGGTGATTGCAT ATTTGGATCAGTTTGGCACTGAACTTCCTGTGAGGTCGGATGTTGCTGGAGAAGTACTAAAGATCTTCTTCGAAGAAGGAGATGCTGTTGGATACAAAGA TCCTCTTATGGCTGTGTTGCCGTCATTTCCGGGCATCCAGGTTCAGTAA
AA sequence Show only first row Show all	>Lus10009843 pacid=23180198 polypeptide=Lus10009843 locus=Lus10009843.g ID=Lus10009843.BGIv1.0 annot-version=v1.0 MDSSVSLRSFRCPVPTISSPQSLAERTCAFSLQSRSFGGKLVYSPAKRNLSIVSCAKTSDSSIASKPADSVVPVESENDGEPRGTFPSGLEALLLEVCDE TEVAELKLKVGDFEMHLRRDIGATTAPLSNISPAMAPPIPSEPMNVTAPAMIPASAPPPPPQSSAKKSDPFINVAFGKSPKLAALEASGTTGYVLVASPI VGSYRKTRTVKKGKPQPRFCKEGDMIKEGQVIAYLDQFGTELPVRSDVAGEVLKIFFEEGDAVGYKDPLMAVLPSFPGIQVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	0	1
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	1.0	0.9778
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	1.4	0.9758
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	1.7	0.9729
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	2.8	0.9659
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	3.7	0.9600
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	3.9	0.9621
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	4.2	0.9553
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	4.9	0.9576
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10011839 [exp]	5.3	0.9443
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	6.9	0.9523

Compare expression of checked genes

Lus10009843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.