Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40390 491 / 4e-171 unknown protein AT5G64190 451 / 2e-155 unknown protein AT2G15020 135 / 2e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010225 [exp] 724 / 0 AT2G40390 555 / 0.0 unknown protein Lus10017423 [exp] 183 / 3e-56 AT2G40390 119 / 7e-33 unknown protein Lus10026592 [exp] 111 / 6e-26 AT2G15020 518 / 2e-180 unknown protein Lus10013880 [exp] 107 / 1e-24 AT2G15020 516 / 1e-179 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183100 [exp] 632 / 0 AT2G40390 590 / 0.0 unknown protein Potri.009G094100 [exp] 144 / 1e-37 AT2G15020 592 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009844 pacid=23180159 polypeptide=Lus10009844 locus=Lus10009844.g ID=Lus10009844.BGIv1.0 annot-version=v1.0 ATGGCTACTTCAAGCTATCCTGATGTATTAGCCTGGATTCAGAGCCTACCTCCAATAACTGAATGGGAAGAAAACTCCATCTCTCTCACCATACATTCTT CTTCTTCTTCTTCCAATCAATCATCTTCCCTCAAGCTTTCCGCTTGGAAGACCGATCACCAGCCTCGAGCAATCTTCTTGTCCATAGCTGCTGATCATCT CAGCTTGACCGTATCTCTTTGGTCTTCAAAAACCATCAAATCCGATTCGAATGGGTTGTTAGGAGGTGATGAAATTTCACTCCTTTTAACAAACTTCATT GAAGACGTCCTTAGTTATGGCCCTCACAAGTGCTGTAGCTCCTCCTCTGTTGTAATCCCAAAGCTGGACTATCTTCCAAACTTCAAGGACATATTCAACC TCTCGTTCCTTACACTTGCTCTCCTAGTCTGCGTTTACGAGGCTCCTGCTGATCTCAGATGGGACTGCCTGGCTAGCCTCAAGAACCAACTTACTGAATG TAGTAACATGAGGAACTCGTCGAGATCACTCATGAAGATGATGGGGTCCAACCTGGAAGAGCAATGGATGAGGTCCATTAATCTGGCGATTACGAACTGG GTTGTGGAGCTGCAAGCTGCTGGTCACAGGACTTTCAGGACGCCTTCCCCGCTCTTCTCTCATTCGTACTCGACCTTGGGGCTGTGGAACGTTCAGTTGT ACTGCCCTGTCATAGCCATGGACATGGAGAGTTCCAGTGGGTCTTCAGCTGATGAGAAACTTCTCTTCTCTCTGAGATATCAGCAGCTTGAAGGTGTTAT GCAGTTCAATTATGAGGTTATTGAGCAAGACAAGTGTGACATATACCGGCTGGTGAACGAAACCCTGATGGCTGAACGAGGAGTTGGGTCGGAGGAGAAG CATTTCCCATCGCGAATCGCAGTCCACATCACTCCGACCCTGCAGACAAACATAACAAGTGTATCAGTGAGCAGCTCATCCGCTAATCCGACAAGGGAAA TCGAGTTGGAAAAGGGTATAGAGACTTCATTCGACCCGCCAAGTAGCGTGGGGCTCAAGCTGTCTGCTGGGGAGACCGTGTCGATGAGCTTGAAGCCGTG GAAGTTTGAAGGTTCTGTGTATGCCTACAGTGCAGTGTTCAGTTGGTTTCTTCATGATAACATGGATGGAAGGGAGGTTGTGTCCTCCAAGCCTTCAGCT TTGGCACTGATCAACCCTCGATCGTGGTTTAGGGACCGGTACAGGACAGCGTACCGCCCATTCACAAGGCAAGGAGGGGTAGTGTTTGCTGGGAATGAGT ATGGTAAGAGTATAACTTGGAAGGCGGATAAAAGTGTTGCTGGGAAAACAATGGAGTTTGAGATCAAGGGATGGATTTGGCTCACCTACTGGCCTAACAA GTACAGGACATTTTACAGCGAGACTCGGAGGCTGGAGTTCAGGGAAATTGTGCATCTCACCGTACCCTAA
AA sequence Show only first row Show all	>Lus10009844 pacid=23180159 polypeptide=Lus10009844 locus=Lus10009844.g ID=Lus10009844.BGIv1.0 annot-version=v1.0 MATSSYPDVLAWIQSLPPITEWEENSISLTIHSSSSSSNQSSSLKLSAWKTDHQPRAIFLSIAADHLSLTVSLWSSKTIKSDSNGLLGGDEISLLLTNFI EDVLSYGPHKCCSSSSVVIPKLDYLPNFKDIFNLSFLTLALLVCVYEAPADLRWDCLASLKNQLTECSNMRNSSRSLMKMMGSNLEEQWMRSINLAITNW VVELQAAGHRTFRTPSPLFSHSYSTLGLWNVQLYCPVIAMDMESSSGSSADEKLLFSLRYQQLEGVMQFNYEVIEQDKCDIYRLVNETLMAERGVGSEEK HFPSRIAVHITPTLQTNITSVSVSSSSANPTREIELEKGIETSFDPPSSVGLKLSAGETVSMSLKPWKFEGSVYAYSAVFSWFLHDNMDGREVVSSKPSA LALINPRSWFRDRYRTAYRPFTRQGGVVFAGNEYGKSITWKADKSVAGKTMEFEIKGWIWLTYWPNKYRTFYSETRRLEFREIVHLTVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40390			unknown protein		Lus10009844 [exp]	0	1
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	5.2	0.9653
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	8.4	0.9605
					Lus10011453 [exp]	9.1	0.9173
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Lus10012177 [exp]	11.0	0.9337
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	12.0	0.9543
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	13.6	0.9524
AT3G14880			unknown protein		Lus10013711 [exp]	15.7	0.9503
					Lus10038463 [exp]	17.5	0.9461
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	19.3	0.9457
					Lus10005830 [exp]	20.4	0.9457

Compare expression of checked genes

Lus10009844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.