Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56140 852 / 0 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 840 / 0 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT5G12470 177 / 6e-49 Protein of unknown function (DUF3411) (.1) AT5G22790 100 / 4e-22 RER1 reticulata-related 1 (.1) AT2G37860 95 / 2e-20 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G24690 87 / 8e-18 Protein of unknown function (DUF3411) (.1) AT3G08640 84 / 4e-17 Protein of unknown function (DUF3411) (.1) AT3G08630 83 / 7e-17 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040960 [exp] 1341 / 0 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10010224 [exp] 1040 / 0 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10017422 [exp] 276 / 1e-86 AT3G56140 290 / 3e-92 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10019744 [exp] 181 / 2e-50 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 178 / 4e-49 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 178 / 4e-49 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 177 / 5e-49 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10043364 [exp] 91 / 6e-19 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10003242 [exp] 81 / 8e-16 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074300 [exp] 929 / 0 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.001G256300 [exp] 187 / 1e-52 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 186 / 3e-52 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 180 / 4e-50 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.009G150400 [exp] 98 / 2e-21 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G103100 [exp] 94 / 3e-20 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.001G210500 [exp] 88 / 7e-18 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 87 / 2e-17 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 80 / 1e-15 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 79 / 2e-15 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related CL0572 [flax] [poplar] TIKI PF04187 [flax] [poplar] Cofac_haem_bdg Haem-binding uptake, Tiki superfamily, ChaN
Representative CDS sequence Show only first row Show all	>Lus10009845 pacid=23180169 polypeptide=Lus10009845 locus=Lus10009845.g ID=Lus10009845.BGIv1.0 annot-version=v1.0 ATGACGCACCACCACTTCTTCACCTCCTCCGCTCCACAACCTCCGCCACACCTCCTCCATCAATTCACGACTGAAGCACCTCGCCGCCTCCGCTACCAGC GCTTATCTTTCTCTATCCGTGCTGCTCTAGAATCTCATAGCAAATCTGAAGAATGCGGCCCAAGTCAAACCTGCAGTACCATTGGTGGTACGAAGAGGAG GCAATTCTTCATCGCTCCGGTCCTAACTCTCGGCGCTTCAGTCCTCCAGTCTGCCGTCACAAGGGCGGATGAAATTTTCCCCCAACCGCCGTCTCCTTCT TCTCCTCCTCCTCCTTCCCTCCCGTCTCTATCTCCGCCTCCGGAGGTCCAACCTTCACCGCCGGCGGAAGCGGCGAAGAATGCGGAGGAGCTGATGCCAA TCAATTCGAGAATTTACGACGCCACTGCGATTGGAGAGCCGCTGGCTCTTGGGAAGGAAAAGAGTGCTAAAGCGTTGGAGAGACTGACGAACGCGAGGAT TGTGTATTTAGGCGAGGCGGAGCAAGTTCCGACGCTGGACGACAAGACTTTGGAGCTCGAAATTGTGAAGAGCTTGAGGGCACGATGCGTTGACAACCAG AGGCTCATTTCCCTAGCAATGCAGGCTTTTCATTGTGAACTGCAGCCAATGCTCGACAATTATCTGGACAAAAGGATAGATGAAGAAGCTTTCAAGGCTC TTTCATGGAATTGGCCTCCTGAGCGGTGGCAAGAGTATGAGCCTCTCCTTAGTTATTGCCGGGATAATGGAGTTAGAATTGTTGCTTGTGGTGTCCCTCC TAAGGTCCTGAGGACTGTCCAAGCTGAGGGGCTTCAAGGACTTTCAAAGCCTGACCGCAAGCTGTATACTCCTCCAGCAGGGTCAGGGTTCAGCTCAGGA TTCACCTACATCTCTCGCAGGCTAAATGATTTGAGTACTGAAAACCTGTCTATTGCTAGTGGGCCAAGCTCATACTTGTCCGCACAAGCAAGAGTAGTGG AGGATTACAGCATGTCTAGAATCATTTTGCAATCAGTGGAGGATGAAGGAGCTTCTGGGCTGCTAGTTGTAATAACAGGAGCAAGCCATGTTACTTATGG GTCGAGGGGAACTGGGTTGCCGGCAAGAATATCAAAGAAGTTGCAAAAGAGGAACCAAGTTGTCATACTGCTGAATCCTGAAAGACAACTCATCCGGAGA GAAGGAGAAGTTCCTGTTTCTGACTTCTTATGGTATTCTGCTGCCAAGCCCTGCACTAGGAATTGCTTTGATCGTGCAGAAATTGCTAGAGTAATGAATG CAGCCGGTAGGAGGAAAGATGCACTGCCACAGGATCTTCAAAAGGGTCTCGATCAAGGTTTAGTATCACCAGAGGTGCTACAAAATTTCTTTGACTTGGA GCAGTATCCTCTTATCAAGGAACTAACTGATCGTTTTCAGGGTTTCAGAGAGAGGTTATTGGCAGATCCAAAATTCTTGCATAGGTTAGCCATAGAAGAA TCGATTTCAATCACTGCTAATATTGTAGCACAATACGAGAAACGCAAGGAGAATTTCTTTGAAGAGCTTGACTATGTAATCACAGACACTGTCAGGGGAA TTGTTGTTGATTTTTTCACAGTATGGCTTCCTGCTCCAACTATCACCTTCCTTTCATACAACGATCAGTTGAATTCCCCTGACAGTATGAATGCCTTACA AGGCCTTCTTGGGTCCATTCCAGATAATGCATTTCAAAAGAATCTTGCTGGAAAAGACTGGAATTTGAGTCACAGAGTTGCATCTGTTTTATTTGGTGGT CTTAAGCTTTCTGGTGTAGGATTTGTTTCCAGCATTGCAGCTGTAGCTTCCTCAAACGCCATACTTTCAGTTCGCAAACTCATGAATCCAATGTTGGTTA TTGACCAACGGATTAAAAGACCCCCAATACTGAAAACAGCAGTTGTTTACGCAAGTTTCCTTGGCGTATCAGCGAATCTTCGATACCAGATTATTGCCGG GGTAATCGAACACAGGATTTCTGATGAATTCACGTCACAGACAATACTTGTAGGAATGCTGTCATTCATTGCCCGGACGATAAACTCCTACTGGGGAACC CAGCAATGGATCGATCTTGCACGCTTTTCGGGACTGCAAAGCAGTAAGAATAATGAACAGGTATCTTCTAAGATTGTGGATCCGATTGTGGGATGCAAAA GCACAGAAGAAGCAGGAACTACCGAAATTAAGAATTAA
AA sequence Show only first row Show all	>Lus10009845 pacid=23180169 polypeptide=Lus10009845 locus=Lus10009845.g ID=Lus10009845.BGIv1.0 annot-version=v1.0 MTHHHFFTSSAPQPPPHLLHQFTTEAPRRLRYQRLSFSIRAALESHSKSEECGPSQTCSTIGGTKRRQFFIAPVLTLGASVLQSAVTRADEIFPQPPSPS SPPPPSLPSLSPPPEVQPSPPAEAAKNAEELMPINSRIYDATAIGEPLALGKEKSAKALERLTNARIVYLGEAEQVPTLDDKTLELEIVKSLRARCVDNQ RLISLAMQAFHCELQPMLDNYLDKRIDEEAFKALSWNWPPERWQEYEPLLSYCRDNGVRIVACGVPPKVLRTVQAEGLQGLSKPDRKLYTPPAGSGFSSG FTYISRRLNDLSTENLSIASGPSSYLSAQARVVEDYSMSRIILQSVEDEGASGLLVVITGASHVTYGSRGTGLPARISKKLQKRNQVVILLNPERQLIRR EGEVPVSDFLWYSAAKPCTRNCFDRAEIARVMNAAGRRKDALPQDLQKGLDQGLVSPEVLQNFFDLEQYPLIKELTDRFQGFRERLLADPKFLHRLAIEE SISITANIVAQYEKRKENFFEELDYVITDTVRGIVVDFFTVWLPAPTITFLSYNDQLNSPDSMNALQGLLGSIPDNAFQKNLAGKDWNLSHRVASVLFGG LKLSGVGFVSSIAAVASSNAILSVRKLMNPMLVIDQRIKRPPILKTAVVYASFLGVSANLRYQIIAGVIEHRISDEFTSQTILVGMLSFIARTINSYWGT QQWIDLARFSGLQSSKNNEQVSSKIVDPIVGCKSTEEAGTTEIKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	0	1
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	2.4	0.8791
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	6.3	0.8483
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	8.9	0.8650
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10019797 [exp]	13.3	0.8665
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	14.0	0.8657
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10003036 [exp]	14.1	0.8356
AT2G35920			RNA helicase family protein (....		Lus10009022 [exp]	16.4	0.8627
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	18.0	0.8614
AT4G23940			FtsH extracellular protease fa...		Lus10032404 [exp]	19.8	0.8601
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	25.2	0.8418

Compare expression of checked genes

Lus10009845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.