Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 112 / 4e-27 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44910 111 / 6e-27 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT3G44900 107 / 2e-25 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G08150 99 / 1e-22 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT1G08140 96 / 1e-21 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT5G22910 92 / 2e-20 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT3G44930 91 / 6e-20 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08135 90 / 1e-19 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT2G13620 87 / 1e-18 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT2G28170 87 / 1e-18 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000161 [exp] 541 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040962 [exp] 341 / 1e-117 AT3G44910 64 / 2e-15 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) Lus10040963 [exp] 317 / 3e-101 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 314 / 1e-100 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10026408 [exp] 110 / 3e-26 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10041344 [exp] 109 / 4e-26 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10017540 [exp] 108 / 1e-25 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10037374 [exp] 107 / 3e-25 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 106 / 5e-25 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 250 / 8e-77 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G171200 [exp] 247 / 2e-75 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 222 / 3e-66 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 131 / 1e-33 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 125 / 1e-31 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.009G078000 [exp] 108 / 6e-26 AT5G37060 677 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.006G176400 [exp] 107 / 2e-25 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.016G127800 [exp] 103 / 4e-24 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.019G123800 [exp] 102 / 1e-23 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 100 / 6e-23 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10009846 pacid=23180193 polypeptide=Lus10009846 locus=Lus10009846.g ID=Lus10009846.BGIv1.0 annot-version=v1.0 ATGATATTCCCACCATTCCCAAACCAAGTGTTGGGTTCCTTATCCAAGATAGGATACGTATTATTCGCATTCTTGGCAGGAATAAGGATGGATCCAAGCC TGATCCCGCAATCCGGCAGGAAAGCAGTATTCATGGGGTTCCTTCTATTTGCTTACCCTTTCACTATGATACACACAATTGTAGTTGAGTTCCAAAAAGA CAACATTTTCAACTTCGAGCTCAAACTTGCAATTTACAAAGGTGTTGGAATTGTCTTTGGTTCCATCACAACTTCCCAATTCGTTGGAGTGAGTCACCTC TTGACACAGCTTAGGATAACCAACTCTCAGCTTGGACACCTTGCCTTAGCATCCACATTGGTCAGTGAGTTGCTCCGATTCGCCTACTCCTCCACTCTTG GTGTCCTGGAAGCGTTCATGTTCGTAGCTAGGAGATCGGGGATCCAATCCTTACTCTTCAGCATGCTTTTGGTAGGCTTCATTATGGTTGTGTTGAGAGG GTTTGTGCTTTGGGCAATCAGGAACACCCCACAGGGGAAACCCATGAAGGAAATCTACATAACTATGGTTGTTGGTGTGCTTCTCAGTTTAGTCACACTT GGGGATTCTGTTGGAATGCATTACCTTTTTGGCCCTTTCCTTTTGGGTCTTATCATACCAGCTGGATCTCCATTGGCAACCAGTTTGATTGCCAAGCTTG AAACTGCTGTCAATGGCTTGTTTATCCCCATCATTCTCATGTTCTGCTCCACAAGCTTTGATTTGGTAGCCTTTTCCCAGGATTACTCCAAAGTTCTTCC CTTTAGGATTACCTTGCTTGGTTATTTCTTGAAGTTGGCCTTCACTTTCTTAATGGGACTCGGTTTTAAGCTATCTGCTAAAGATTGTGCAGCTTACACA CTCATTGTCAATGCTAAAGGTGTTCTTGAAGTTGGCGTCTTCCTCAGCTTTGGTAACCTTGCGGTACATCTGATTCATTCATTATCTCTACATACATATA TAGAGTAG
AA sequence Show only first row Show all	>Lus10009846 pacid=23180193 polypeptide=Lus10009846 locus=Lus10009846.g ID=Lus10009846.BGIv1.0 annot-version=v1.0 MIFPPFPNQVLGSLSKIGYVLFAFLAGIRMDPSLIPQSGRKAVFMGFLLFAYPFTMIHTIVVEFQKDNIFNFELKLAIYKGVGIVFGSITTSQFVGVSHL LTQLRITNSQLGHLALASTLVSELLRFAYSSTLGVLEAFMFVARRSGIQSLLFSMLLVGFIMVVLRGFVLWAIRNTPQGKPMKEIYITMVVGVLLSLVTL GDSVGMHYLFGPFLLGLIIPAGSPLATSLIAKLETAVNGLFIPIILMFCSTSFDLVAFSQDYSKVLPFRITLLGYFLKLAFTFLMGLGFKLSAKDCAAYT LIVNAKGVLEVGVFLSFGNLAVHLIHSLSLHTYIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10009846 [exp]	0	1
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10039953 [exp]	5.3	0.7846
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10010837 [exp]	9.4	0.7956
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	9.7	0.8248
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	12.8	0.8165
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	23.2	0.8034
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	31.0	0.7775
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10027434 [exp]	34.2	0.7541
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	41.7	0.7895
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	42.3	0.7789
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	44.4	0.7802

Compare expression of checked genes

Lus10009846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.