Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41430 56 / 1e-10 LSR1, CID1, ERD15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) AT4G14270 54 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040964 [exp] 186 / 9e-62 AT2G41430 69 / 2e-15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10035419 [exp] 61 / 8e-13 AT2G41430 113 / 2e-33 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10031029 [exp] 61 / 9e-13 AT2G41430 115 / 3e-34 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10019769 [exp] 57 / 7e-11 AT2G41430 91 / 1e-23 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10016358 [exp] 57 / 1e-10 AT2G41430 83 / 1e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10018018 [exp] 56 / 1e-10 AT2G41430 102 / 8e-29 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10042014 [exp] 54 / 8e-10 AT2G41430 99 / 1e-27 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074600 [exp] 114 / 3e-33 AT4G14270 66 / 2e-14 unknown protein Potri.010G182800 [exp] 112 / 2e-32 AT4G14270 65 / 6e-14 unknown protein Potri.016G041600 [exp] 64 / 2e-13 AT2G41430 121 / 1e-35 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.006G044600 [exp] 62 / 3e-13 AT2G41430 122 / 3e-36 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.001G023100 [exp] 62 / 8e-13 AT4G14270 89 / 3e-23 unknown protein Potri.003G202500 [exp] 62 / 1e-12 AT2G41430 81 / 5e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10009847 pacid=23180161 polypeptide=Lus10009847 locus=Lus10009847.g ID=Lus10009847.BGIv1.0 annot-version=v1.0 ATGGATGTAATGTTTGCCCATAGATCATCATCCTCGACCTTGAATCCAGACGCCCCGCTGTTCGTCCCGGTGGAGGACTTCTCCGATCAGTGGTGGGCCC TCATTCAATCCTCTCCCTGGTTTCGCGACTACTGGCTGCAGGAGCACTACCAAGATCCCCAATCCGATCTTTCCCTCCCCGACGATCTCGATTTCTTTGA CGACGGCGCCGATTTCCTCCACTTCTCCGGCAAAGATGAGGATGCGAAGAAGAAGGAGGAGGAGGAAGCCAGGCTGAATTGGGATATGATATCGGCTGGA TCGATGAAATGGAAGAAAGGTCAAGCTGATCTGGCTCGGTCGCCGAGGTACTCTGATAAGCCTGCCAAGATTGTGAATGTGAAGATGAGTCCAAGGTCGA TTCAGCAGCCCAGGTAG
AA sequence Show only first row Show all	>Lus10009847 pacid=23180161 polypeptide=Lus10009847 locus=Lus10009847.g ID=Lus10009847.BGIv1.0 annot-version=v1.0 MDVMFAHRSSSSTLNPDAPLFVPVEDFSDQWWALIQSSPWFRDYWLQEHYQDPQSDLSLPDDLDFFDDGADFLHFSGKDEDAKKKEEEEARLNWDMISAG SMKWKKGQADLARSPRYSDKPAKIVNVKMSPRSIQQPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	1.7	0.9264
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	2.0	0.9179
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	2.4	0.9166
					Lus10015768 [exp]	4.2	0.8542
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	5.3	0.9092
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	5.3	0.8833
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	5.7	0.8718
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	6.0	0.8701
					Lus10011136 [exp]	6.7	0.8744
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	7.2	0.8687

Compare expression of checked genes

Lus10009847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.