Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47500 1101 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 893 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 763 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 541 / 4e-176 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G73860 501 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 499 / 2e-160 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 484 / 1e-155 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G18410 478 / 3e-151 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10310 431 / 5e-136 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 346 / 6e-103 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029865 [exp] 885 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 839 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10020682 [exp] 720 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10010302 [exp] 695 / 0 AT2G47500 506 / 2e-171 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032897 [exp] 552 / 1e-179 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10032264 [exp] 510 / 2e-163 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 505 / 3e-161 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10001306 [exp] 489 / 1e-156 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10018049 [exp] 486 / 4e-156 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201000 [exp] 1348 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 1313 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 1022 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 983 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.011G165200 [exp] 563 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G467600 [exp] 561 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 513 / 3e-165 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 507 / 1e-162 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 494 / 1e-158 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 484 / 1e-154 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10009851 pacid=23180137 polypeptide=Lus10009851 locus=Lus10009851.g ID=Lus10009851.BGIv1.0 annot-version=v1.0 ATGGCGGGAGAGGGCGGAGCATTAATGTCGTTCTCGGTGGCGTCGGTGGTAGAGGATGTACTTCAACAGCACGGGAATAAGCCGAGAGGACTTGATTTGG ATTCCAGACGAGCTGAAGAAGCTGCTTCAAGAAGGTACGAAGCGGCGGGATGGCTGAGAAAGATGATCGGAGTGGTAGCGGCCAAGGATTTACCAGCTGA GCCTTCTGAGGATGAGTTTCGGCTTGGACTCAGGAGTGGAATTATACTCTGCAATGCTCTCAACAAGGTTCAATCCGGAGCTGTCCCCAAGGTGGTGGAG AGCCCATGTGATGCTGCTCTTATACCGGATGGTGCTGCGTTGTCAGCGTTTCAGTACTTTGAGAATGTGAGGAATTTCCTTGTGGCTGTACAGGAAATCG GGATTCCGACTTTTGAGGCATCGGATCTTGAGCAGGGAGGTAAATCTGCAAGGGTAGTCAACAGTGTTCTGGCACTGAAGTCCTACAGTGAGTGGAAGCA ATCAGGAGGAAATGGTGTTTGGAAATTCGGTGGGAATGTGAAGCCTATCATGCCGACGAAAACTTTTGTGAGAAAGAATTCAGAGCCATTCACCAATTCA TTGTCCAGGAGTATGTCGGTTAATGATAGATGCTTGAACACTGCCTCGGCTGATGCTGATCCCAGTAAAATGCAGTCTACCGGCTCCTTGAGCATGCTTG TCCGTGCAATTTTGATGGATAAGAAACCTGAAGAAGTTCCTACGTTGGTGGAATCAGTGCTCTCAAAGGTGGTTGAGGAGTTTGAGCACCGTATTTCAGG CTATTATGATTTGGCAAAGGGTGATTCTAAAGAGACATCAGTTACTCAGACCAAAAAGTTCTTCCCCAGATCTGCATCCATTGATAAGCGGGTTGAAACG AAAATCGCCAAAGTATCTAAGAAACAGGAGAGCTTCGAGAAAAGTCACACCCCTAGTGAAGAAGAAAAGAATAAACTCTTGAAGCAGCAATCGCTGTTTG ATCAACAGCAACAAGACATTCAGGATCTGAAGCACACTCTACATGTAACAAAAACTGGTATGCAATTCATACAAAGGAAGTTTCATGAGGAGTTTAACAA TCTCGGTGTGCACATTCACGGACTAGCTCATGCAGCTTCTGGTTACCATAAGGTTCTTGAAGATAACCGTAAGCTCTACAATCAGGTGCAAGACCTTAAG GGAAGCATCCGAGTTTACTGCCGTGTGAGGCCATTTCTGTCTGGACAATCAGACTACTTGAGCAATGTGGATTATTTGGAGGAGGGAACCATTACCATTA ACGCACCATCTAGGCATGGGAATGGCCAAAAGTCCTTCAGCTTTAATAAAGTCTTTCAACCATCTGCAACCCAAGCTGAGGTATTCGGCGACATGCAACC ATTAATTCGCTCTGTTCTTGATGGATTCAATGTCTGCATATTTGCCTACGGTCAAACAGGATCAGGAAAAACCTTCACCATGACTGGACCGAGAGATCTT ACAGAGAAAAGCCAAGGTGTCAACTATAGGGCCCTGGGTGATCTGTTTCTTCTTGCGGAACAAAGGAGAGACACATTCCGTTACAATGTGGCTGTTCAGA TGATTGAGATTTACAATGAACAAGTCAGAGATCTTCTTGTCAGTGATGGAAGCAACAAGAGATATCCTTTCCATTTAACTTTTTCTTCTGCACCTTCATA TGCGAACCTTGTTCCAGTATCGTCAACATCTGATGTCATTGATTTGATGAACCTGGGGCATAGAAATCGTGCAGTCGGTGCAACAGCGTTGAATGACCGT AGCAGCCGTTCTCATAGTTGCTTGACCGTTCATGTCCAAGGAAAAGACTTGACCTCTGGAAATATCCTACGTGGATGTATGCACCTGGTTGATCTTGCTG GGAGTGAAAGGGTAGATAAATCCGAGGTCAGAGGAGATAGGCTGAAAGAGGCACAGCACATTAATCGATCTCTGTCAGCTTTAGGAGATGTGATTGCTTC ACTTGCCCAGAAGAATCCACACGTCCCTTACCGAAACAGCAAGCTTACCCAACTGCTCCAAGATTCACTTGGAGGCCAAGCCAAGACACTAATGTTTGTT CACATAAGTCCCGAACCTGATGCTGTTGGAGAAACGATAAGCACACTTAAGTTTGCAGAACGAGTAGCAACTGTCGAACTTGGTGCAGCTCGAGTGAACA AAGATAGCTCGGATGTGAAAGAGCTTAAAGAACAGATCGCTACCTTGAAGGCGGCATTAGCAAGGAAAGAAGGGAAGGATCAGTACGTGAACGGGAGCAA TGAAAGATTCAAAAGAAAAGAAAGTGAGTCCTCACCATTTAACTCTAACCAGCGACTCGGAGATGTTGAAGAGAGCAATAACCTTAGACAACCAATGGGT GATGTGGGCAACATAGAGGTTCGTGCCAACGTTTTGTCGAGGCAAAGGACGCAAAGTTTTGATCTCGATGAACTACTGACGAATTCGCCCCCATGGCCTC CGGTCAGTAGTCCTAGCCAAAATTACGGCGAGGATGAGAGAGAAGTCGGGTCTGTTGGATGGGTGGACAAGGTGATGGTGAACAAGCAGGAGGCAGCAAA TAGGCTTGAGAGCTCTTTAGGAAGCTGGGAAGCTGATAACGGTCATTTCCCTGAAGCATTTTATCAGAAGTATCTCTCAGATTCCAACGGTAAAGTCCAG TCTCAGCAGTCATACAACATGTTCAGCACGAACAATGCTGCTAGTACGTACGAGCTGGACGATCTCGATGCTGCCACCACCAGCGATTCGTCGGAGCCCG ATTTGCTCTGGCAATTCAACCAGTCCAAACTCGGCAGCATTGGGAGCGTGATGGAGTCCAAGAATAAGAGAACGCCACCTTCGAGATCGTCGAAAATTCC GGAGTTGAGGTAA
AA sequence Show only first row Show all	>Lus10009851 pacid=23180137 polypeptide=Lus10009851 locus=Lus10009851.g ID=Lus10009851.BGIv1.0 annot-version=v1.0 MAGEGGALMSFSVASVVEDVLQQHGNKPRGLDLDSRRAEEAASRRYEAAGWLRKMIGVVAAKDLPAEPSEDEFRLGLRSGIILCNALNKVQSGAVPKVVE SPCDAALIPDGAALSAFQYFENVRNFLVAVQEIGIPTFEASDLEQGGKSARVVNSVLALKSYSEWKQSGGNGVWKFGGNVKPIMPTKTFVRKNSEPFTNS LSRSMSVNDRCLNTASADADPSKMQSTGSLSMLVRAILMDKKPEEVPTLVESVLSKVVEEFEHRISGYYDLAKGDSKETSVTQTKKFFPRSASIDKRVET KIAKVSKKQESFEKSHTPSEEEKNKLLKQQSLFDQQQQDIQDLKHTLHVTKTGMQFIQRKFHEEFNNLGVHIHGLAHAASGYHKVLEDNRKLYNQVQDLK GSIRVYCRVRPFLSGQSDYLSNVDYLEEGTITINAPSRHGNGQKSFSFNKVFQPSATQAEVFGDMQPLIRSVLDGFNVCIFAYGQTGSGKTFTMTGPRDL TEKSQGVNYRALGDLFLLAEQRRDTFRYNVAVQMIEIYNEQVRDLLVSDGSNKRYPFHLTFSSAPSYANLVPVSSTSDVIDLMNLGHRNRAVGATALNDR SSRSHSCLTVHVQGKDLTSGNILRGCMHLVDLAGSERVDKSEVRGDRLKEAQHINRSLSALGDVIASLAQKNPHVPYRNSKLTQLLQDSLGGQAKTLMFV HISPEPDAVGETISTLKFAERVATVELGAARVNKDSSDVKELKEQIATLKAALARKEGKDQYVNGSNERFKRKESESSPFNSNQRLGDVEESNNLRQPMG DVGNIEVRANVLSRQRTQSFDLDELLTNSPPWPPVSSPSQNYGEDEREVGSVGWVDKVMVNKQEAANRLESSLGSWEADNGHFPEAFYQKYLSDSNGKVQ SQQSYNMFSTNNAASTYELDDLDAATTSDSSEPDLLWQFNQSKLGSIGSVMESKNKRTPPSRSSKIPELR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	1.4	0.9259
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10038169 [exp]	2.4	0.8859
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	3.3	0.8734
AT2G29620			unknown protein		Lus10009543 [exp]	3.7	0.9184
AT5G17910			unknown protein		Lus10009544 [exp]	4.0	0.9041
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	4.2	0.9066
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10040047 [exp]	4.5	0.8512
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	5.9	0.8880
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10004776 [exp]	6.9	0.8720
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	7.9	0.8842

Compare expression of checked genes

Lus10009851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.