Plant FIBer expression Database

Lus10009852 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010299
[exp]
394 / 3e-139 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G001000
[exp]
112 / 5e-29 ND /
PFAM info
Representative CDS sequence
>Lus10009852 pacid=23180146 polypeptide=Lus10009852 locus=Lus10009852.g ID=Lus10009852.BGIv1.0 annot-version=v1.0
ATGAGTACTGTGTCGTTAGGAGCAAGGATGAGAAAAGGGCTGAGGAACTTCTGCCAGGGAGATTCCTCCACTTCCACCGGCCGCCGGAACAACCTCCCAC
CGCTACTTCACCGGCAACAACATCTCTTCCTCGTCAACAATTCCAGCACCGCCGTCAATCTGCTTCCTGATCACGACGAGAGTTCCGATGACAACCACGA
GGATGAGGGAACATCCTTTTACAACCGTAACAGTCAAACCCACCACCGCCCATCGTCACCAGTCGGAGCCCCGACCCCAACCTTGGAGGACATGATCAAA
CAGCTTGAACTAGAGGAGGAGATGGCCGCCGTCGCCGCTGCCAGAAAAACAACAACGATCAACCTCAGCAGCGATAGACGAAGAACGTCGTGCGTTAATA
CCAGCTCCGATCGGGTATTAAGATCCGCAAGAAACGCGCTGAACCAGTACCCGCCACGCTTCTCCCTTGACGGCAAGGACTCCATGTACCGCTCCTCCTT
CCTACTCAACGACAACGACCGCCGCGGCCGCCTGTCGTCGGCCTGCTGCTGCGACGTCGCCGGGAGGTCGAGGCGGCTGGCCAGTCTGGTCAACGACGGG
AATAATAAGAATAATAATGTTTATCGGTACGATCAGAAGAATGTAGTATGGTGTAGGCCCGGAGTTGTGCCGAAGCTGATGGGGCTGGACGCCATTCCGA
TTCCGCGGAATAGTTTCTTCGCCGTTTATGATAAGAAATCTCCGGTGGTGTTGAGGAAGAGGAGATATGGCGGGGGGGGGGGGGGAGATGCTGAGAGAGG
AATTAGGCCGCCGGAAATTAGGAGACCGGCGAATAGCGAAGATGCTGAGAGAGGAATTAGGCCGCCGGAAATTAGGAGACCGGCGAATAGATGA
AA sequence
>Lus10009852 pacid=23180146 polypeptide=Lus10009852 locus=Lus10009852.g ID=Lus10009852.BGIv1.0 annot-version=v1.0
MSTVSLGARMRKGLRNFCQGDSSTSTGRRNNLPPLLHRQQHLFLVNNSSTAVNLLPDHDESSDDNHEDEGTSFYNRNSQTHHRPSSPVGAPTPTLEDMIK
QLELEEEMAAVAAARKTTTINLSSDRRRTSCVNTSSDRVLRSARNALNQYPPRFSLDGKDSMYRSSFLLNDNDRRGRLSSACCCDVAGRSRRLASLVNDG
NNKNNNVYRYDQKNVVWCRPGVVPKLMGLDAIPIPRNSFFAVYDKKSPVVLRKRRYGGGGGGDAERGIRPPEIRRPANSEDAERGIRPPEIRRPANR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10009852
[exp]
0 1
AT3G06120 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (... Lus10010503
[exp]
9.1 0.7957
AT2G33580 Protein kinase superfamily pro... Lus10036731
[exp]
12.4 0.6876
AT5G20630 ATGER3, GLP3A, ... GERMIN-LIKE PROTEIN 3, ARABIDO... Lus10010769
[exp]
15.3 0.8052
AT5G64250 Aldolase-type TIM barrel famil... Lus10006545
[exp]
18.1 0.7951
AT3G24140 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (... Lus10007139
[exp]
18.7 0.7844
Lus10021443
[exp]
21.2 0.7419
AT2G21200 SAUR-like auxin-responsive pro... Lus10008992
[exp]
21.5 0.7657
AT5G59510 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 ... Lus10001569
[exp]
22.9 0.7716
AT4G38840 SAUR-like auxin-responsive pro... Lus10008995
[exp]
25.5 0.7557
AT4G38840 SAUR-like auxin-responsive pro... Lus10008999
[exp]
28.0 0.7432

Lus10009852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.