Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13410 258 / 5e-85 unknown protein AT1G55546 89 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010298 [exp] 543 / 0 AT3G13410 327 / 5e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G000900 [exp] 311 / 1e-105 AT3G13410 290 / 2e-97 unknown protein Potri.003G223601 [exp] 238 / 6e-78 AT3G13410 231 / 4e-75 unknown protein Potri.008G223987 [exp] 105 / 5e-28 AT3G13410 112 / 1e-30 unknown protein Potri.012G124888 [exp] 87 / 4e-21 AT3G13410 96 / 3e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009853 pacid=23180122 polypeptide=Lus10009853 locus=Lus10009853.g ID=Lus10009853.BGIv1.0 annot-version=v1.0 ATGGTGAAGGTTGTTGCGATGTGGCTTACAATAGCTGTTTTCGCAGCTCTTCTTCATGAGCCAATGGCCGTCCGATCACCAACTTCCCCGGCTCTTCTAT TTTCTCCTCACTTGCGGTTCTCAAATGCTGAAATGGATGAAGCAGTGACATACCAGACAATTGCACCAAGGGAACTTGCTAAGGCTGTTTTGTCTCAAGG CGGCTGGTCAAACTTAATGTGCCCTGGTAGAAAAGTTCACCAGCCTGTAGACGTGGCACTCGTCTTTGTTGGTAGAGAGCTTATATCGTCAGACATTTCT TCGAACACTAATACAGACTCTGCCCTGGTGGACTTGCTCAAGGTCGCCTTTATGAACTCCAGTTTTTCTATGGGATTTCCTTACGTTGCAGCATCACCAA AGGAGTCGATGGAGAATTCTTTGTTGATGGGTTTCCAAGAAGTTTGTGGAGAGGAGTTACTAACCAGTACAGTTGCATTTTCTGAGTCATGCTCCATTAA TGCTGAAAAAAATTTCCAGAAGCTTACAGATATGAAAGCAGTTCATGACCATATCGGTTCAAGGACCGAAAAGAGGGTAGATGGACAAACAGACCTTGTT GTTTTCTGTCATGATGGCGTCAGAAAATCGCAGAGTGAAGGCGAAGTATTTTCTGAGCTTATCAATTCCGTGGAGACATCAGGAGCAAAATACTCGGTTC TTTATGTATCGAATCCCTTTCAGTCCATCCAATACCCTTCTCAGCTAGGAAGGCTTCTGAGTGAAGATGCTGCACGAAATGGCTCGCTAAAATCCAGCGG GTGCGATGAATTATGCCAAATAAAATCATCCCTTCTGGAAGGACTTCTAGTTGCGATCGTTTTGCTCCTGATCCTGATATCAGGGCTTTGCTGCATGATG GGAATTGACACGCCGACACGATTCGAGGCACCCCAAGAATCTTAA
AA sequence Show only first row Show all	>Lus10009853 pacid=23180122 polypeptide=Lus10009853 locus=Lus10009853.g ID=Lus10009853.BGIv1.0 annot-version=v1.0 MVKVVAMWLTIAVFAALLHEPMAVRSPTSPALLFSPHLRFSNAEMDEAVTYQTIAPRELAKAVLSQGGWSNLMCPGRKVHQPVDVALVFVGRELISSDIS SNTNTDSALVDLLKVAFMNSSFSMGFPYVAASPKESMENSLLMGFQEVCGEELLTSTVAFSESCSINAEKNFQKLTDMKAVHDHIGSRTEKRVDGQTDLV VFCHDGVRKSQSEGEVFSELINSVETSGAKYSVLYVSNPFQSIQYPSQLGRLLSEDAARNGSLKSSGCDELCQIKSSLLEGLLVAIVLLLILISGLCCMM GIDTPTRFEAPQES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13410			unknown protein		Lus10009853 [exp]	0	1
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10033179 [exp]	2.8	0.8122
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010618 [exp]	9.0	0.7800
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	14.6	0.7869
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	16.2	0.7327
AT4G31490			Coatomer, beta subunit (.1)		Lus10027160 [exp]	16.6	0.7551
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10001986 [exp]	22.8	0.7061
AT2G35840			Sucrose-6F-phosphate phosphohy...		Lus10015995 [exp]	23.2	0.7215
AT3G27240			Cytochrome C1 family (.1)		Lus10041579 [exp]	23.7	0.6687
AT5G08139			RING/U-box superfamily protein...		Lus10008874 [exp]	28.1	0.6676
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10019149 [exp]	28.4	0.6745

Compare expression of checked genes

Lus10009853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.