Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02816 179 / 3e-58 Protein of unknown function, DUF538 (.1) AT4G02370 176 / 6e-57 Protein of unknown function, DUF538 (.1) AT4G02360 137 / 8e-42 Protein of unknown function, DUF538 (.1) AT1G02813 123 / 2e-36 Protein of unknown function, DUF538 (.1) AT5G19590 74 / 3e-17 Protein of unknown function, DUF538 (.1) AT5G19860 70 / 2e-15 Protein of unknown function, DUF538 (.1) AT3G07460 69 / 3e-15 Protein of unknown function, DUF538 (.1.2) AT3G07470 67 / 2e-14 Protein of unknown function, DUF538 (.1) AT5G16380 66 / 9e-14 Protein of unknown function, DUF538 (.1) AT5G37070 63 / 1e-12 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010297 [exp] 301 / 1e-106 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 148 / 6e-46 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10033088 [exp] 84 / 4e-21 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1) Lus10017733 [exp] 82 / 3e-20 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10018818 [exp] 80 / 4e-20 AT1G02816 51 / 4e-10 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 82 / 2e-19 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 77 / 4e-18 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 75 / 1e-16 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 72 / 8e-16 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203400 [exp] 202 / 2e-67 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.014G127600 [exp] 200 / 6e-66 AT1G02816 206 / 4e-68 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 184 / 1e-59 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 174 / 5e-56 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 159 / 4e-50 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 85 / 2e-21 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 69 / 5e-15 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 65 / 1e-13 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 51 / 2e-08 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 49 / 1e-07 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10009854 pacid=23180160 polypeptide=Lus10009854 locus=Lus10009854.g ID=Lus10009854.BGIv1.0 annot-version=v1.0 ATGTCTGCGTCGGCGTCGCTTGTTCTCTTCTTCGCCCTCCTCATCGTAAAACCTTTCCCTCCGGCCGCCGCGGAAGCGCTATCAGCGTACGAAGTCCTCG CAGGATACAACTTCCCGATCGGCCTCCTTCCACAGGGAGCAACCGGATATGAACTCGACCCGTCCACCGGAAGATTCCGCGCTTATCTTAACGGAAGCTG CAGCTTCTCCTTGGAAGGGTCGTACCAGCTGAAATACAGCTCCGTAATCGGCGGGTACCTCAGCGAGAATCGGCTCACTAAGCTCACAGGAGTCAGCGTG AAGATTCTCTTCCTGTGGCTGAACATCGTCGAGGTGGTGAGGAGCGGCGACGACATCGGTTTCTCCGTAGGGATAGCCTCCGCCAGCTTCCCTATCGAGA ATTTCTACATATGCCCCAAGTGCGGCTGTGGAATCGTCTGCGGTACTGAGCAAGTGAGCAAGCCGGTGAGGAGATCTTTCGTCTCCTCCATTTAG
AA sequence Show only first row Show all	>Lus10009854 pacid=23180160 polypeptide=Lus10009854 locus=Lus10009854.g ID=Lus10009854.BGIv1.0 annot-version=v1.0 MSASASLVLFFALLIVKPFPPAAAEALSAYEVLAGYNFPIGLLPQGATGYELDPSTGRFRAYLNGSCSFSLEGSYQLKYSSVIGGYLSENRLTKLTGVSV KILFLWLNIVEVVRSGDDIGFSVGIASASFPIENFYICPKCGCGIVCGTEQVSKPVRRSFVSSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02816			Protein of unknown function, D...		Lus10009854 [exp]	0	1
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	1.4	0.9227
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	1.7	0.9163
AT5G08060			unknown protein		Lus10040513 [exp]	2.0	0.9159
AT4G32020			unknown protein		Lus10005344 [exp]	4.7	0.9168
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	6.7	0.8942
AT5G03110			unknown protein		Lus10019920 [exp]	6.9	0.9049
AT5G67020			unknown protein		Lus10019344 [exp]	11.0	0.9106
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	11.6	0.8905
AT5G60800			Heavy metal transport/detoxifi...		Lus10021432 [exp]	11.8	0.8701
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	12.0	0.8929

Compare expression of checked genes

Lus10009854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.