Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02816 168 / 8e-54 Protein of unknown function, DUF538 (.1) AT4G02370 166 / 5e-53 Protein of unknown function, DUF538 (.1) AT4G02360 162 / 8e-52 Protein of unknown function, DUF538 (.1) AT1G02813 129 / 1e-38 Protein of unknown function, DUF538 (.1) AT5G19590 74 / 2e-17 Protein of unknown function, DUF538 (.1) AT3G07470 74 / 3e-17 Protein of unknown function, DUF538 (.1) AT5G16380 74 / 7e-17 Protein of unknown function, DUF538 (.1) AT3G07460 72 / 3e-16 Protein of unknown function, DUF538 (.1.2) AT5G19860 67 / 3e-14 Protein of unknown function, DUF538 (.1) AT1G55265 67 / 3e-14 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009854 [exp] 148 / 6e-46 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10010297 [exp] 148 / 7e-46 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) Lus10033088 [exp] 95 / 4e-25 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1) Lus10017733 [exp] 95 / 5e-25 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 80 / 5e-19 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 79 / 2e-18 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 76 / 2e-17 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 76 / 2e-17 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 74 / 6e-17 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203400 [exp] 160 / 9e-51 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 159 / 3e-50 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.014G127600 [exp] 154 / 6e-48 AT1G02816 206 / 4e-68 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 152 / 2e-47 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 144 / 2e-44 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 91 / 1e-23 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 74 / 1e-16 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 71 / 1e-15 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 66 / 5e-14 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.006G104000 [exp] 63 / 7e-13 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10009855 pacid=23180156 polypeptide=Lus10009855 locus=Lus10009855.g ID=Lus10009855.BGIv1.0 annot-version=v1.0 ATGGAATCCTCCGCCATTTGCACACTCCTCTTCGCCGCCGCCGCACTCTTCTCCACCACCACCGCTTCCACTTACCCCCTCGACGGCGGCGGCGGCGGTA CAACGCTGACCGCGTACCAAGTCCTCCAGCAGTACGATTTCCCGGTGGGGATACTCCCGAAGGGGATCAGCGGCTACGAGATCGACACGGAAACGGGGAA ATTCAAGGCCTACCTACAGCAGAACTGCAAGTTCACGATCCAATCGTACCAGCTGGAGTACGGCACCACGATCAGCGGCGTAATTAGCAAGGGCCGGATC AGCAATCTGAAAGGCGTGAAGGTTCATATCCTGTTCCTCTGGCTCAACATCGTCGAGGTCGTCCACGACGGCGGCGAGATGCAGTTCTCCGTCGGGATCA CTTCCGCCAATTTCCCCCTCGACGGCTTCGACGAGAGCCCCCAGTGCGGCTGCGGTTTCGATTGCGACGGATTGGTTTCATCGATATGA
AA sequence Show only first row Show all	>Lus10009855 pacid=23180156 polypeptide=Lus10009855 locus=Lus10009855.g ID=Lus10009855.BGIv1.0 annot-version=v1.0 MESSAICTLLFAAAALFSTTTASTYPLDGGGGGTTLTAYQVLQQYDFPVGILPKGISGYEIDTETGKFKAYLQQNCKFTIQSYQLEYGTTISGVISKGRI SNLKGVKVHILFLWLNIVEVVHDGGEMQFSVGITSANFPLDGFDESPQCGCGFDCDGLVSSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02816			Protein of unknown function, D...		Lus10009855 [exp]	0	1
					Lus10026444 [exp]	3.2	0.7624
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	8.9	0.7303
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	9.9	0.7434
					Lus10004247 [exp]	13.5	0.7206
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	14.6	0.7645
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	26.2	0.7205
AT4G04980			unknown protein		Lus10018473 [exp]	27.1	0.6803
					Lus10033246 [exp]	27.7	0.6400
AT5G61220			LYR family of Fe/S cluster bio...		Lus10003467 [exp]	28.8	0.6507
					Lus10000458 [exp]	32.8	0.6678

Compare expression of checked genes

Lus10009855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.