Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02350 687 / 0 SEC15B exocyst complex component sec15B (.1) AT3G56640 470 / 2e-157 SEC15A exocyst complex component sec15A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010296 [exp] 660 / 0 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1) Lus10038993 [exp] 462 / 4e-154 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1) Lus10027288 [exp] 460 / 3e-153 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1) Lus10010439 [exp] 459 / 8e-153 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203200 [exp] 765 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.014G127400 [exp] 765 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1) Potri.016G032100 [exp] 493 / 3e-166 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1) Potri.006G034200 [exp] 476 / 1e-159 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04091 [flax] [poplar] Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence Show only first row Show all	>Lus10009856 pacid=23180173 polypeptide=Lus10009856 locus=Lus10009856.g ID=Lus10009856.BGIv1.0 annot-version=v1.0 ATGGAAGTTGACAATCTGTGGGAGACTGCTGTGAGTAAGATGTGTTCCGTGTTAGAGGATCAGTTCTCCAGGATGCAGACAGCTAACCATCTTCTCTTGA TTAAGGATTACGTGAGTTTGCTTGGAGTGACATTAAGGAGATATGGCTACACTGTGGATGCTTTGTTAGACGTTTTGAGTAAGCATAAGGACAAATATCA CGAGCTTTTGTTATCCGATTGCCGCAAGCAGATTGGCGAGGCACTCTCAGCTGATAAATTCGAGCAAATGTTGATGAAGAAGGAGTATGAATACTCCATG AATGTGCTCTCTTTCCAGATTCAGACCTCCGATATCGTGCCGGCTTTTCCTTACGTTGCTCCATTTTCGTCAACAGTTCCTGACTGTTGCAGGATTGTAC GGTCTTTCATCGAAGACTCTGTGAGTTACATGTCATACGGTGGCCAACTTGATTTCTTTGATGTTGTTAAGAAGTACTTGGATAGGCTTCTGAGTGATGT TCTGGACGGATCACTTTTCAAGCTCATCAACTCGTCAGTGCATGGAGTTTCTCAGGCTATGCAGGTCGCAGCAAACATGACAGTGTTAGAGCGAGCCTGC GATTTCTTCTTCCGCCATGCCGCACAGCTATCCGGTATTCCATTGAGAATGGCGGAGAGGAGCAGGAGGCAGTTTCCATTAAACAACGCCAGAGATGCAG CTGAAGAAATGCTATCCGGGTTACTGAAACAAAAGGTGGATGGTTTCATGACATTGATCGAGAACGTGAACTGGATGGCCGACGAACCAGTACAGAACGG AAACGAATACGTGAATGAAGTCATGATTTATCTTGAAACTCTCGTCTCCACCGCACAACAGATATTACCAGGCCAAGTCCTTAAAAGGGTGTTGAGAGAC GTTCTTGCTCACATTTCCGAGAAGATCGTGGGATCTCTATTTGCAGATTCTGTCAAGAGATTCTCTATACATGCTGTTATGGGGATCGAGATTGACGTCA AGATATTGGAATCCTTTGCGGATAATCAAGGAGAGGCGAACGACCTGAAATCGGCACTTGGGGAAGCGAGGCAGTTGGTTAATCTGCTGCTGAGCAGCCA TCCGGAGAACTTTCTGAATCCTGTGATTAGGGAAAGGAGTTACAATTTGTTGGACTATAGGAAAGTAGTCACGATATCGGAGAAGCTGAAAGATCCTTCG GATAGACTGTTCGGAACGTTTGGAAGCAGGGGAGCTAAGAAAGTGAACTGGATGGCGGACGAACCAGTACCGAGCGGAAATGAATACGTGAACGAAGTCA TGATTTATCTCGAAACTCTCGTCTCGACCGCACAACAGATATTACCAGGCCAAGTCCTTAAAAGGGTGTTGAGAGATGTTCTCGGTCACATCTCCGAGAA GATTGTGGGATCTCTATTTGCAGATTCTGTCAAGAGATTCTCTATACATGCTGTTATGGGGATCGAGATTGACGTCAAGATATTGGAATCCTTTGCGGAT AATCAAGGAGAGGCGAACGACCTGAAATCGGCACTTGGGGAAGCGAGGCAGTTGGTTAATCTGCTGCTGAGCAGCCATCCGGAGAACTTTCTGAATCCTG TGATTAGGGAAAGGAGTTACAATTTGTTGGACTATAGGAAAGTAGTCACGATATCGGAGAAGCTGAAAGATCCTTCGGATAGACTGTTCGGAACGTTTGG AAGCAGGGGAGCTAGGCCGAACCCGAAGAAGAAATCGTTGGATACTTTGATAAAGAGACTCAAAGACGTGAGCTGA
AA sequence Show only first row Show all	>Lus10009856 pacid=23180173 polypeptide=Lus10009856 locus=Lus10009856.g ID=Lus10009856.BGIv1.0 annot-version=v1.0 MEVDNLWETAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYTVDALLDVLSKHKDKYHELLLSDCRKQIGEALSADKFEQMLMKKEYEYSM NVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSYMSYGGQLDFFDVVKKYLDRLLSDVLDGSLFKLINSSVHGVSQAMQVAANMTVLERAC DFFFRHAAQLSGIPLRMAERSRRQFPLNNARDAAEEMLSGLLKQKVDGFMTLIENVNWMADEPVQNGNEYVNEVMIYLETLVSTAQQILPGQVLKRVLRD VLAHISEKIVGSLFADSVKRFSIHAVMGIEIDVKILESFADNQGEANDLKSALGEARQLVNLLLSSHPENFLNPVIRERSYNLLDYRKVVTISEKLKDPS DRLFGTFGSRGAKKVNWMADEPVPSGNEYVNEVMIYLETLVSTAQQILPGQVLKRVLRDVLGHISEKIVGSLFADSVKRFSIHAVMGIEIDVKILESFAD NQGEANDLKSALGEARQLVNLLLSSHPENFLNPVIRERSYNLLDYRKVVTISEKLKDPSDRLFGTFGSRGARPNPKKKSLDTLIKRLKDVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	2.2	0.7995
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	6.6	0.7217
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	7.3	0.7496
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	15.2	0.6950
AT1G52343			unknown protein		Lus10007686 [exp]	15.7	0.6436
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	16.2	0.6967
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	22.8	0.7219
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	24.1	0.6928
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	25.5	0.6401
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	27.5	0.6427

Compare expression of checked genes

Lus10009856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.