Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62380 53 / 1e-07 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT2G27300 49 / 3e-06 NAC NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) AT1G71930 48 / 5e-06 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT5G46590 48 / 6e-06 NAC ANAC096 NAC domain containing protein 96 (.1) AT1G12260 47 / 2e-05 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT5G04410 47 / 2e-05 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G17730 46 / 2e-05 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G10490 46 / 3e-05 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G08790 46 / 3e-05 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04060 45 / 4e-05 NAC ANAC046 NAC domain containing protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010294 [exp] 616 / 0 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10031639 [exp] 241 / 3e-75 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10033699 [exp] 226 / 2e-69 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10031595 [exp] 182 / 1e-55 ND / Lus10024006 [exp] 127 / 6e-32 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10025078 [exp] 121 / 5e-30 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10008200 [exp] 84 / 1e-18 ND 43 / 6e-05 Lus10004531 [exp] 85 / 7e-18 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10008240 [exp] 85 / 8e-18 AT1G33060 50 / 1e-06 NAC 014 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028300 [exp] 81 / 1e-16 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 81 / 1e-16 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.016G027900 [exp] 79 / 4e-16 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028900 [exp] 78 / 5e-16 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 77 / 6e-16 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G231300 [exp] 74 / 2e-14 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 74 / 2e-14 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.019G063000 [exp] 72 / 2e-14 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.015G002900 [exp] 74 / 5e-14 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.017G058100 [exp] 67 / 8e-12 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10009858 pacid=23180136 polypeptide=Lus10009858 locus=Lus10009858.g ID=Lus10009858.BGIv1.0 annot-version=v1.0 ATGGAGAACGGCGGCGATCTTTCCGATGTGCTGTCTTTCCTGCCATCGGGGGCGAAATTCTTGCCGACAGCGACTGAATTAGTGGGACACTATCTCTACA ATATCCACGGAATCTTCACTCCTAATCAATGCTACCCTGTCCAAGAATCGGACCTATACGCCGAAAAGGAGCCCTGGGAGATATGGAAAGACCACCAAAT CAGATCCCACTCCGAAACTAACGACTTTTATCTCTTCACCAAACTGAAGAAGGCGGCGACGAACTTCGTTCGGACAATCGGGAACGCCGGCGGGAACGGG CACGGCGAGGTCAAGGAGAAGACGTGCACCACCGAATTCAGAGGAAGAGTAGACGGATTGATGTGGGTCGGGAAGAGGAGGAAGTTCACGTACAAGAATA ATCGGAATTTGGAGAGCGAGAACAGGAAGTGGATACTGTACGAGTACAGAATCGGAAATTTCGACACGGTGGTTTGTACGCTGAGGAACAACGGGTCTCC GGCGGAGGAGAAGAGATCGGTGAATAGAATGAGGAGGAGGAAGTTTGAAGAGATATTGGGTTGTATTGTTCATGATCGGCGAACAGAATTAATCCCTGGC CCTGCTCTCAAGAAGTTGCAATGTCATCGGAAGCAGAGCAATTCCGCCGATGTTCTTCCGACGACTCCGATCTTGGTTGAGGACGAAACGGCGTCGTTCG ATGATGCTACTGTTCCCGTTGAGAATGAAACGTCCGCGTTTGAAGGAGCTGGTGATACTGTTCTTGTTCCGTTGAATTCTCCCACGCGTAATAATCCAGT GCAATCTGGAGTTGAGAAAGTGAAGATATTTGGGGGCATCAGTGAACCAGAGACAAAAGTTTGTGATGAGGATGAAGAAGCACCAAATAGTTACTCCTTT ACTACATACTGCGGCATTGGCGTAATTTTGGACGATGTTCTTGCTACGGAGGCACCTCATGATCATCAGGATACTATACGAACCGGTAAGGACGGAGTGA TACCGAGAGATGATGTGGAGCTACTGCAATTCGGAGATTTCAAAGAAGCTGCAAGGGAGAATATGCTGCTGCTGCAGCCATGGTGTACACCGCCACTGCT ACTCGAGGACAATCGTTACTATACTCTGATCAACAGTTTGTGGGATTGGAATGATTGCTTACCACTTCCAATTTCCATGTAA
AA sequence Show only first row Show all	>Lus10009858 pacid=23180136 polypeptide=Lus10009858 locus=Lus10009858.g ID=Lus10009858.BGIv1.0 annot-version=v1.0 MENGGDLSDVLSFLPSGAKFLPTATELVGHYLYNIHGIFTPNQCYPVQESDLYAEKEPWEIWKDHQIRSHSETNDFYLFTKLKKAATNFVRTIGNAGGNG HGEVKEKTCTTEFRGRVDGLMWVGKRRKFTYKNNRNLESENRKWILYEYRIGNFDTVVCTLRNNGSPAEEKRSVNRMRRRKFEEILGCIVHDRRTELIPG PALKKLQCHRKQSNSADVLPTTPILVEDETASFDDATVPVENETSAFEGAGDTVLVPLNSPTRNNPVQSGVEKVKIFGGISEPETKVCDEDEEAPNSYSF TTYCGIGVILDDVLATEAPHDHQDTIRTGKDGVIPRDDVELLQFGDFKEAARENMLLLQPWCTPPLLLEDNRYYTLINSLWDWNDCLPLPISM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10009858 [exp]	0	1
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	2.2	0.8349
					Lus10008155 [exp]	4.9	0.8345
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	9.0	0.8229
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	10.8	0.7697
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	11.2	0.7940
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	13.8	0.7609
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	15.4	0.7775
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	20.4	0.7595
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	20.7	0.8076
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	21.4	0.7752

Compare expression of checked genes

Lus10009858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.