Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 299 / 5e-102 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 241 / 2e-78 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 223 / 4e-72 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 208 / 9e-67 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 200 / 3e-63 ATSEH soluble epoxide hydrolase (.1) AT2G26750 192 / 2e-60 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010293 [exp] 411 / 2e-146 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 258 / 3e-86 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 254 / 1e-84 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 238 / 6e-78 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 227 / 1e-73 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 220 / 6e-71 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 218 / 2e-70 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 204 / 3e-65 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 204 / 7e-65 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 312 / 2e-107 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 304 / 4e-104 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 263 / 7e-88 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 262 / 2e-87 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 241 / 3e-79 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 240 / 6e-79 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 236 / 4e-77 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 194 / 1e-62 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 176 / 3e-54 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 94 / 2e-22 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10009859 pacid=23180179 polypeptide=Lus10009859 locus=Lus10009859.g ID=Lus10009859.BGIv1.0 annot-version=v1.0 ATGCTCGACGCCGTTGGCGTAACCGAGCAGGTGTTCCTCGTCGGCCACGATTGGGGCGCTATTATGGCTTGGCATTTCTGCTTGTTTCGGCCCGATCGAA TTAGGGCATTGGTGAACATGAGCGTCGCTTTCAACCCTAGGAATCCGATGAAGAAGCCCGTTGATAGCTATAGGGCTTCTCTTGGAGACGATTTCTACAT ATGCAGGTTTCAGGAACCTGGAGAAGTAGAACAAGATTTTGCAGAAATGGGCACAGCAAAGGTGATAAAGAAGTTCCTCACAACCCGAAGTCCCAAGCCG CCATGTATACCGAAATCAACAGGGTTTCGAGCTTTACCAGAGTCGCCCGAGCTGCCACCGTGGCTATCGGAATCCGACATTGCTTACTACGCTGCCAAGT TCCAGCGCAGCGGCTTCACCGGAGGACTGAACTACTATCGCTGCATGGACCTCACGTGGGAGCTGATGGCCGCGTTTAGCGGCTTACAAGTGAAAGTTCC GGTCAAGTTCATGGTGGGAGACATGGACATCACTTACAATTTTCCGGGATCGAAGGATTACTTGCAAAAAGGTGGGATGAAGAAGCTCGTCCCGTTTCTG GAAGAAGTTGTTGTGCTTGAAGGAGTTGCTCATTTTCTACAGCAGGAGAAGCCGGAGGAAATCGGGGCTCACATCCACGGTTTCTTCTCCAAGTTCTTGG CGTGA
AA sequence Show only first row Show all	>Lus10009859 pacid=23180179 polypeptide=Lus10009859 locus=Lus10009859.g ID=Lus10009859.BGIv1.0 annot-version=v1.0 MLDAVGVTEQVFLVGHDWGAIMAWHFCLFRPDRIRALVNMSVAFNPRNPMKKPVDSYRASLGDDFYICRFQEPGEVEQDFAEMGTAKVIKKFLTTRSPKP PCIPKSTGFRALPESPELPPWLSESDIAYYAAKFQRSGFTGGLNYYRCMDLTWELMAAFSGLQVKVPVKFMVGDMDITYNFPGSKDYLQKGGMKKLVPFL EEVVVLEGVAHFLQQEKPEEIGAHIHGFFSKFLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	0	1
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	1.7	0.8721
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	2.4	0.8713
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	2.4	0.8585
AT4G36750			Quinone reductase family prote...		Lus10041718 [exp]	2.4	0.8708
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	2.8	0.8617
					Lus10012353 [exp]	3.9	0.8369
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	5.7	0.8544
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	7.7	0.8447
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	8.4	0.8554
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	11.2	0.8522

Compare expression of checked genes

Lus10009859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.