Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46890 447 / 6e-159 Protein of unknown function (DUF1295) (.1) AT1G18180 67 / 2e-12 Protein of unknown function (DUF1295) (.1) AT1G73650 65 / 1e-11 Protein of unknown function (DUF1295) (.1), Protein of unknown function (DUF1295) (.2), Protein of unknown function (DUF1295) (.3), Protein of unknown function (DUF1295) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010291 [exp] 551 / 0 AT2G46890 425 / 3e-150 Protein of unknown function (DUF1295) (.1) Lus10009061 [exp] 64 / 3e-11 AT1G18180 436 / 2e-155 Protein of unknown function (DUF1295) (.1) Lus10031343 [exp] 63 / 6e-11 AT1G73650 435 / 4e-155 Protein of unknown function (DUF1295) (.1), Protein of unknown function (DUF1295) (.2), Protein of unknown function (DUF1295) (.3), Protein of unknown function (DUF1295) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109200 [exp] 478 / 3e-171 AT2G46890 456 / 1e-162 Protein of unknown function (DUF1295) (.1) Potri.015G039900 [exp] 72 / 5e-14 AT1G18180 405 / 4e-143 Protein of unknown function (DUF1295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF06966 [flax] [poplar] DUF1295 Protein of unknown function (DUF1295)
Representative CDS sequence Show only first row Show all	>Lus10009861 pacid=23180121 polypeptide=Lus10009861 locus=Lus10009861.g ID=Lus10009861.BGIv1.0 annot-version=v1.0 ATGAACAGAAACTTGAAGAACGCATTGATCGCCTTCCTCGTCCCTCTCCCTTCAATCGTCTTCTACTTCTCCTTCCTCCGCCACTTCCATTCCTCCTCCG CCGCCGCAGCAGGCAACTCCGTTTCTCCTCTCTGGTCATGGTGCGCCGCCCACCCTCTCCCCCGGGCCAACCTCCTCTTCTTCTTCAACGTCAATGTCAC CTTCTGGATCATCAGCCAATGCATCTCCAGCCACTGGATGATAGATTTGTACTGGACGGTGATACCGGTGATGCTCGCTTACTACTACTCGACGTTCCCC TTGGTGGCGTTCAATCACCTCCGATCAGGAATCGTGATAGCCATGACTTGGTTATGGAGTTTGAGACTCACTCATAACTACTTCAGGCGGGAGAAATGGC AGTGGGGAGCTCGAGAAGACTGGAGGTTCACTGAGATGAGCCGTCAGTACGGCCGCCATTGGTGGTGGATCTCCTTCTTCTCCGTCTACGTTTCCCAGCA GGTGTTTCTGATGGGCATAACCCTGCCAATGTACACTATCCACACGGTCGACAAGCCACTTAACATCTCCGATTTCGCAGCCATAGCAACCTGCTTGACG GGAATCACGATCGCATACTTCGCAGACACGCAGCTGCACGAATTCGTTACACGAAACGAGAAGCTGAGCGAGATCGGGAAGCCGAAGGTGGCCAATCTTG ACAGAGGGATGTGGCGTTACTCAAGGCATCCAAACTATTTCGGAGAGCAACTGTGGTGGTGGGGGCTGGCTCTGTTTGCGTGGAACCTGGGACATGGATT TGCGTTTGCAGGAGCTATAGTTAACAGTCTCTGCCTCGGTTACGTGACCGTGCTCATTGAGAGAAGGATGCTGGAGCAGGAGTATCGAGCCGAGGCTTAT CGGCTGTATCAGAAGACCACTTCAGTTTGGATCCCGTGGTTCAATTCGTCTGCAATCGAGGAGAAAGATAAAAGCTCTTGA
AA sequence Show only first row Show all	>Lus10009861 pacid=23180121 polypeptide=Lus10009861 locus=Lus10009861.g ID=Lus10009861.BGIv1.0 annot-version=v1.0 MNRNLKNALIAFLVPLPSIVFYFSFLRHFHSSSAAAAGNSVSPLWSWCAAHPLPRANLLFFFNVNVTFWIISQCISSHWMIDLYWTVIPVMLAYYYSTFP LVAFNHLRSGIVIAMTWLWSLRLTHNYFRREKWQWGAREDWRFTEMSRQYGRHWWWISFFSVYVSQQVFLMGITLPMYTIHTVDKPLNISDFAAIATCLT GITIAYFADTQLHEFVTRNEKLSEIGKPKVANLDRGMWRYSRHPNYFGEQLWWWGLALFAWNLGHGFAFAGAIVNSLCLGYVTVLIERRMLEQEYRAEAY RLYQKTTSVWIPWFNSSAIEEKDKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46890			Protein of unknown function (D...		Lus10009861 [exp]	0	1
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	4.0	0.9403
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	5.2	0.9431
AT1G14890			Plant invertase/pectin methyle...		Lus10037919 [exp]	6.0	0.9207
AT3G51490		TMT3	tonoplast monosaccharide trans...		Lus10012709 [exp]	6.8	0.9104
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	8.5	0.9401
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	9.4	0.9381
AT2G46890			Protein of unknown function (D...		Lus10010291 [exp]	9.8	0.9245
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	13.2	0.9279
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	13.5	0.9200
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	18.2	0.9318

Compare expression of checked genes

Lus10009861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.