Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49350 291 / 3e-96 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010290 [exp] 530 / 0 AT1G49350 354 / 6e-120 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152100 [exp] 364 / 2e-124 AT1G49350 392 / 6e-135 pfkB-like carbohydrate kinase family protein (.1) Potri.004G151600 [exp] 360 / 5e-123 AT1G49350 389 / 1e-133 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10009862 pacid=23180195 polypeptide=Lus10009862 locus=Lus10009862.g ID=Lus10009862.BGIv1.0 annot-version=v1.0 ATGAGTCAAACGGCGAGTCCTGCAGCTGAGCGGCGAATAGATCGAATCTCCCGCCACCTCTTCCCGCCGCCGGGAAAGCAACTCAGCCGCCACGTTCTTC ATCAGGCTGGTGTTAGCGGCTGGGAAGCTCCTTACATGATTAGTGCTGTTGGAATCGACTTTGGTGGCAAGCTGCTGTTGGAGAACTGGAAGTTCGCGGG GCTACCAACTGAAGGGATTCGGAAACACCAAGATATCAATACTGCGGTAATATCAAACGTATTCGACACAGATGGAGAGTTGGCTGCTGGTGTTGCAAGT GTGGATGCAATTGAAAAATTCCTCACCCCTGCTTGGATTCAGCAGTGCCAGTCAAGTATTCGCAGTGCTCCTATATTGGTTGTCGATGCGAACTTGAGAC CTATTGCCTTGGAAGCTTCTTGCAAAGTGGCTGCTGAGTTTAATAGACCTGTTTGGTTTGAGCCAGTATCGGTAGCCAAATCTACGAGAATCATCTCGAT TGCCAAGTATGTAACATTTGCTTCACCTAACGAGGATGAGCTTATGTCAATGGCAAATGCATTATCCGGCGAAAACTCTTTCTGTTCAGTCAAAAGAAAC AACGAAGATAAGGATCCTCGAAAATCGTTGTTCGGCAAATTGAAACCAGCAGTTTCAGTTTTGTTAGAGAAAGGAATCAAGATTGTTGCTGTGACCGTTG GTGAAGATGGACTCTTTCTTTGCTCTAACAATTCAGACTTCGTTACATTTAGCTTGCAGGTATCGGAAAGCAACCGAATCGGAAAATGGTTGTACAATGT AGTGATGTCTACCTGTCCTCGTGGAAGACCTTTTGTCTTCTCCACGAAAACCGATCGGACCACCTCTCAGTTGGTTGCTGTACATTTTCCTGCTGTTCCG GCATCTGTCGTGAGACTCACTGGAGCTGGAGATTGCATGGTTGGTGGGACGGTAGCTTCTCTTGTTTCGGGCTTAGACATCGTACAGAGTGTGGGAGTCG GCATTGCGATGGCTAAGGCTGCTATCGAGGCAGAAACAAACAAACGTTCCTTCGGCCGTTAG
AA sequence Show only first row Show all	>Lus10009862 pacid=23180195 polypeptide=Lus10009862 locus=Lus10009862.g ID=Lus10009862.BGIv1.0 annot-version=v1.0 MSQTASPAAERRIDRISRHLFPPPGKQLSRHVLHQAGVSGWEAPYMISAVGIDFGGKLLLENWKFAGLPTEGIRKHQDINTAVISNVFDTDGELAAGVAS VDAIEKFLTPAWIQQCQSSIRSAPILVVDANLRPIALEASCKVAAEFNRPVWFEPVSVAKSTRIISIAKYVTFASPNEDELMSMANALSGENSFCSVKRN NEDKDPRKSLFGKLKPAVSVLLEKGIKIVAVTVGEDGLFLCSNNSDFVTFSLQVSESNRIGKWLYNVVMSTCPRGRPFVFSTKTDRTTSQLVAVHFPAVP ASVVRLTGAGDCMVGGTVASLVSGLDIVQSVGVGIAMAKAAIEAETNKRSFGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	0	1
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	4.2	0.8767
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	4.8	0.8779
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	7.5	0.8645
					Lus10024694 [exp]	10.7	0.8698
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	14.9	0.8589
					Lus10018566 [exp]	16.9	0.8419
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10003708 [exp]	22.2	0.8557
					Lus10032802 [exp]	27.5	0.8411
					Lus10037282 [exp]	29.7	0.8293
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	30.4	0.8540

Compare expression of checked genes

Lus10009862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.