Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00230 605 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59090 603 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46850 601 / 0 Subtilase family protein (.1) AT5G03620 597 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 597 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 592 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59190 591 / 0 subtilase family protein (.1) AT3G46840 577 / 0 Subtilase family protein (.1) AT5G58820 563 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 562 / 0 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040253 [exp] 962 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 959 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10004683 [exp] 890 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 877 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040251 [exp] 824 / 0 AT5G59190 438 / 6e-143 subtilase family protein (.1) Lus10000396 [exp] 691 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004682 [exp] 677 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 671 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10000394 [exp] 641 / 0 AT5G59190 359 / 1e-118 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 904 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 868 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 769 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 699 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 648 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 627 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 618 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.003G120101 [exp] 614 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.006G114500 [exp] 604 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 544 / 1e-176 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10009867 pacid=23180174 polypeptide=Lus10009867 locus=Lus10009867.g ID=Lus10009867.BGIv1.0 annot-version=v1.0 ATGGGAGATCGTCCACAACATCATCATCCTCCTGCTCAACACTTCAAGTTGCTTCAGCGCATTATTGGCAGTTCCAACATTTCCACCGATTCATTGATCT ATAGCTACCACCGCAGCTTCAATGGTTTCGCTGCCAGACTTACACATTCCCAGATGCTTAAACTCTCTGACGAGCAAGGTGTTGTCTCTGTGTTTCCCAG CAGGATTAGGAAACTCCATACCACAGAATCATGGGATTTCATTGGCTTCCCCCAGAATGCTACTAGATGCACTCGACAGTCCTCCGTCGTAGTTGGACTG CTCGACACCGGAATTTCTCCAGAATCCCGAAGCTTCAATGATTCTGGGTTCGGCCCACCTCCTAAGACTTGGAAAGGCACTTGCCAATCTTCTTCTAATT TCACCTGCAACAATAAGATAATTGGAGCTAGGTACTACCACGAGGGAGTAGATCTGGGTCCAAATGACATCCCTTCACCAAGAGATACAGAAGGACATGG AAGCCACGTTGCATCAACAGCAGCAGGAAACTTCGTCCCTCGGGCTAGTCTCTATGGCCTCGCCTACGGGACTGCTCGCGGTGGAGTACCCTGTGCTCGG ATTGCTGTCTATAAGATTTGCTGGTCTTTTGGCTGCTCAGATGCTGATATTCTCAAGGGTTTCGACGATGCTATTGCTGACAATGTTACTGTCATCAATC TCTCTGTTGGTTCCCCCTACCCAATCGAATATTTTCAAGACTCTATTGCTATGGGAGCTTTCCATTCCATGAAGAATGGAATCTTGACTTCCAACTCAGC TGGCAATTCAGGTCCTTCCCCTCGAACAGTTACCAATGTGTCTCCATGGTCCCTTTCGGTTGCTGCCAACACCATTGACAGAAAGTTCACTACTAATGTC ATTCTGGGTAATCGACGCATCTATAATGGGAGCTCTTTGAACACCTTTGAACTCGAGAGAAGGATGTATCGTCTCATATACGGGGGAGATGCACCGAATG AAACTGCTGGATACGATGGTTCCATTTCCAGGTATTGCTTCCCGGGGACCTTAGACAAAGATTTGGTGCGAGGAAGAATTGTATATTGCGATGGTGCTAG CTACGGAGAGGGTCCTTTAGAAGCAGGTGCTGCTGGGGCTATAATGGGGAATTTTGAGTACGGAGAAGTGGCATTTCCAACCCTTTTGCTTGCTTCTCGC TTCAACTCAACCGATGGGAATGACGTCCTCAAGTACTACAACTCAACCAGTAACGCAACTGCAGTGATAAACAAGACAATTAACTACACAGATGGCTCAC CTCCTCACGTAGCTTACTTTTCCTCGAGGGGGCCGAATCCGATAACAAGTGACATCCTCAAACCGGACTTGACAGCACCAGGTGTAAATATGCTAGCAGC ATGGTCAAAAGATACAACATTAACAGGGCAACCTGGGGACACCAGACATGTCTCCTATAACATCATCTCAGGTACTTCCATGTCTTGCCCCCATGTCACT GGAGCAGCAGCTTATGTAAAATCCTTCCACCCAATTTGGTCCCCTGCCGCTGTTAAGTCTGCTCTAATGACAACAGCACGTCACTTGAGTCCCAGGAATA ACCCTGATGCCGAGTTTGCATACGGATCAGGCCAAATCAATCCAATTGCCGCCGTAGATCCTGGATTAGTGTACGACGCTGATGAGACAGACTATGTCAA GTTTTTATGTGGTCAAGGGTATACCTCCAGACAAGTCCGCCTTGTCACGGGAGATAGGAGTAGTTGTTCTCCAGGCAACAATATAGCTGCATGGGATCTA AATTACCCTTCGTTCACTCTATCGTCCAACTCATCAGGAGAATCTATAACTCGGATGTTCCGTAGAAGGGTGACGAACGTTGGACCAGCTGCACGGGCAC AATATACAGCAAGAGTGAAGGGTGCAGAAGGGGTTAAGGTCCAGGTTGAACCAAAGTCACTGTCTTTTGAGCGTGTTGGCGAGGTGAAGTCCTTTAATTT GACAGTGAAGGCTGTGGTTGGCGACCACTCTATCATCTCTGGTACTTTGGTGTGGAGTGATGGAGTGCATAGAGTGAGAAGCCCTATTGTGACATTCCCC AGACACCTAAGAATTGCAGCAGATTCCTTGGTGTACAGCTACCACAGGAGCTTCAATGCCTTCGCTGCCAAACTTACTGAGGCCGAGAAAGACAAACTAT CCGGGTATAAAGACGTAGTCTCTGTGTTCCCCAGTCTGAAGAGACAACTCCACACCACAAGGTCATGGGACTTCCTGGGTTTCCCCCAGAATGTGACAAG AACAACAGGAGAGAGCGACATTACCATTGGAATGCTCGATACTGGGGTTTGGCCGGAATCTCAAAGCTTCAATGATTCAGGTTATGGTCCTCCTCCCAAG AAATGGAAGGGTACTTGTCAATCCTCTTCCAACTTCACCTGCAACAACAAGATAATTGGAGCTAGATATTATCATACTCAAAGTGAAATTAGCACAAAAG ATGCTGATTCCCCAAGGGACACTGAAGGTCACGGGACACACACTGCATCAACAGCAGCAGGGAGCTTTGTTAATCCAGCTAGTCTCCTTGGCATTGCCTC TGGGACGGCTCGTGGATGTGTTCCCTCAGCTCGAATCGCGGTCTACAAAATCTGCTGGTCTGATGGCTGCTCTGATGCTGACATTCTAGCAGCATTTGAT GATGCCATTGCTGACGGAGTTGACATTATCTCCCTCTCAGTTGGTAGTTCCCCACAGGACTATTTTGAAGATACTATTGCTATTGGTGCTTTCCATTCTA TGAAGAATGGGATTCTCACTTCCAACTCAGCTGGTAACAGTGGCCCTGCCCCTAGCACAATCTCCAATTGCTCCCCTTGGTCTCTTTCTGTTGCTGCTAG CACCACTGATAGAAAGTTCATCACCAATGTCAAGTTGGGTAATGGCAAGGTTCTTGGGGGAAGTTCTCTAAATACTTTTAAGCCTGGTCAGAAGATGTAT CCGATAATCTATGGACGTGATGCACCAAATAGGACAACGGGAAGTGCTGGATCGATGTCCAGGTACTGCTATGAAGGATCATTGGACAAGGATCTTGTGA AAGGGAAGATTGTATACTGCGATGAAGCCACTACCGGGACGGGACCATTAGAAGCTGGTGCTATTGGCTCCATAATGCCATATTCTTCACCAACAGAGAA TGAATCTCCTTTCCCTTTACCTGTTTCCCTCATGGCTGCCACTGATGGCGCTAAAGTGCTGGATTACATAAACTCAACTAGAGATCCAACTGCAGTTATT TTAAGAACAACTGATTATTCAGATTCTTCATCCCCTCATGTGGTGTATTTTTCATCAAGGGGACCTAATCCCATAACCAGTGACATTCTCAAGCCGGACT TGACAGCACCTGGAGTTAACATCCTAGCAGCTTGGACTGAAGCAACCAGCTTAACAGGTGAAAGTGGAGACACTAGAATTGTCCCTTACAACATCATCTC TGGGACATCCATGTCTTGCCCCCACGTGTCTGGAGCAGCTGCTTATGTTAAATCATTTCACCCCACTTGGTCTCCAGCCGCCATCAAGTCGGCTCTGATG ACAACAGCACTTTCAATGAGTGTCAAAGACAATGCCGATGCTGAGTTTGCATACGGATCAGGGCAGATAAATCCCGTAATGGCTGCAGACCCCGGGCTAA TTTATGATGCCGGAGAGAGTGACTATGTTAAATTGCTTTGCGGGCAAGGATATAGCACGAAACAACTCCGCCTTGTCACAGGAGATCAAAGTGTTTGTTC AACATCAGCAAATGGAACAGTATGGGATCTCAACTACCCTTCTTTTGCTCTTTCATCATCAGCATCATCATCATCATCCATGAAGACTGTGACCCAAGTG TTCCATAGAACTGTGACAAATGTCGGGCAAGCAGTATCCAGTTACTTGGCATTGGTGCATGCTCCATCTGGGCTTAAGGTCCAAGTTGAACCAAATGTGC TTGATTTCAAAGGTGTTGGAGAGAAACAACAGTTTGTTGTGACAGTCACCGCTCTGTTGGGAAACTCAACAATCTCTGGTTCTCTGCTTTGGAGTGATGG CAAGCACACTGTTAGAAGCCCTATTGTGGCCTTTCTCAAGGACTAA
AA sequence Show only first row Show all	>Lus10009867 pacid=23180174 polypeptide=Lus10009867 locus=Lus10009867.g ID=Lus10009867.BGIv1.0 annot-version=v1.0 MGDRPQHHHPPAQHFKLLQRIIGSSNISTDSLIYSYHRSFNGFAARLTHSQMLKLSDEQGVVSVFPSRIRKLHTTESWDFIGFPQNATRCTRQSSVVVGL LDTGISPESRSFNDSGFGPPPKTWKGTCQSSSNFTCNNKIIGARYYHEGVDLGPNDIPSPRDTEGHGSHVASTAAGNFVPRASLYGLAYGTARGGVPCAR IAVYKICWSFGCSDADILKGFDDAIADNVTVINLSVGSPYPIEYFQDSIAMGAFHSMKNGILTSNSAGNSGPSPRTVTNVSPWSLSVAANTIDRKFTTNV ILGNRRIYNGSSLNTFELERRMYRLIYGGDAPNETAGYDGSISRYCFPGTLDKDLVRGRIVYCDGASYGEGPLEAGAAGAIMGNFEYGEVAFPTLLLASR FNSTDGNDVLKYYNSTSNATAVINKTINYTDGSPPHVAYFSSRGPNPITSDILKPDLTAPGVNMLAAWSKDTTLTGQPGDTRHVSYNIISGTSMSCPHVT GAAAYVKSFHPIWSPAAVKSALMTTARHLSPRNNPDAEFAYGSGQINPIAAVDPGLVYDADETDYVKFLCGQGYTSRQVRLVTGDRSSCSPGNNIAAWDL NYPSFTLSSNSSGESITRMFRRRVTNVGPAARAQYTARVKGAEGVKVQVEPKSLSFERVGEVKSFNLTVKAVVGDHSIISGTLVWSDGVHRVRSPIVTFP RHLRIAADSLVYSYHRSFNAFAAKLTEAEKDKLSGYKDVVSVFPSLKRQLHTTRSWDFLGFPQNVTRTTGESDITIGMLDTGVWPESQSFNDSGYGPPPK KWKGTCQSSSNFTCNNKIIGARYYHTQSEISTKDADSPRDTEGHGTHTASTAAGSFVNPASLLGIASGTARGCVPSARIAVYKICWSDGCSDADILAAFD DAIADGVDIISLSVGSSPQDYFEDTIAIGAFHSMKNGILTSNSAGNSGPAPSTISNCSPWSLSVAASTTDRKFITNVKLGNGKVLGGSSLNTFKPGQKMY PIIYGRDAPNRTTGSAGSMSRYCYEGSLDKDLVKGKIVYCDEATTGTGPLEAGAIGSIMPYSSPTENESPFPLPVSLMAATDGAKVLDYINSTRDPTAVI LRTTDYSDSSSPHVVYFSSRGPNPITSDILKPDLTAPGVNILAAWTEATSLTGESGDTRIVPYNIISGTSMSCPHVSGAAAYVKSFHPTWSPAAIKSALM TTALSMSVKDNADAEFAYGSGQINPVMAADPGLIYDAGESDYVKLLCGQGYSTKQLRLVTGDQSVCSTSANGTVWDLNYPSFALSSSASSSSSMKTVTQV FHRTVTNVGQAVSSYLALVHAPSGLKVQVEPNVLDFKGVGEKQQFVVTVTALLGNSTISGSLLWSDGKHTVRSPIVAFLKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	2.6	0.9183
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	3.2	0.9110
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	4.0	0.9210
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	4.9	0.9133
AT5G12360			unknown protein		Lus10039048 [exp]	6.5	0.9329
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	7.7	0.9229
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	8.8	0.9234
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	9.2	0.8811
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	11.1	0.8814
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	13.2	0.8889

Compare expression of checked genes

Lus10009867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.