Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03620 574 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 569 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 568 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59090 565 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59190 565 / 0 subtilase family protein (.1) AT5G59120 564 / 0 ATSBT4.13 subtilase 4.13 (.1) AT3G46850 555 / 0 Subtilase family protein (.1) AT5G58840 553 / 0 Subtilase family protein (.1) AT5G58830 550 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G46840 546 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000396 [exp] 952 / 0 AT5G59190 477 / 4e-160 subtilase family protein (.1) Lus10004683 [exp] 934 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10040253 [exp] 914 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 912 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 878 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004682 [exp] 634 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 618 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 610 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 600 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 877 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 834 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 775 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 642 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.006G114500 [exp] 620 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 597 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.002G151900 [exp] 586 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.003G120101 [exp] 581 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.009G037900 [exp] 577 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 522 / 2e-177 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10009868 pacid=23180157 polypeptide=Lus10009868 locus=Lus10009868.g ID=Lus10009868.BGIv1.0 annot-version=v1.0 ATGGGCTACCGTTCCAATACCGACACTCCTGCTTCAGCCCTTCATGTCAGCATCCTTCGTCAGCTTACCGGCAGCGTAAGCGTTGCTTCCGAATCCTTGG TATACAGCTACACCAAGAGCTTCAATGGCTTTGCCGCATGGCTCACTTTGACCCAGCTGGCCAAACTCTCCGGCTATGAAGGTGTGGTTTCTGTTTTCCC TAGCCAGAGGAGGCAACTCCACACCACGAGATCATGGGACTTCCTCGGCTTCCCCCAGAATGTCTCAAGAACCACCATGGAGAGCGACATTATCGTCGGA ATGCTCGACACTGGAATTTGGCCCGAGTCCCCAAGCTTTAATGATTCTGGGTATGGCCTCCCGCCAAAGAAATGGAAGGGTACCTGCCAGTCCTCTTCCA ATTTCACTTGTAACAACAAGATAATTGGAGCTAGGTTTTACCATGCTGGCCGAAACTTTAGTGAAGAGGAATTTCCCTCACCTAGGGATTCTGAAGGTCA TGGGTCTCACACTGCATCCACAGCAGCTGGAAACTTGGTCACTTCTGCTAGTCTTCTTGGTCTTGCCTCTGGAACGGCTCGTGGCGGGGTCCCTTCTGCC CGAATTGCTGTCTACAAGATTTGTTGGTCTGATGGCTGTTTCGATGCTGATATTCTAGCTGCTTTTGATGATGCTATTGCTGATGGAGTTGACATTATCT CCTTGTCCGTTGGAGGAGCCCCAACTGACTATTTCAAAGACGCTATAGCTATTGGGGCTTTCCATTCTATGAAGAAGGGAATTCTTACATCCAATTCTGC TGGTAATTCAGGTCCGGAACCAGGTTCTATCTCCAACTGCTCCCCTTGGTCACTCTCTGTAGCGGCTAGCACCATCGATCGCCAGTTCTTAACTACTGTC CAGTTGGGTAATGGACAGAATTATAAGGGTCTCTCTATAAATACTTTTCAACCAAGTAGTTCGTATCCTCTTATCTATGCCGGAGATGCACCTAATAGAA CTTCAGGGCAAAATTTATCCGACTCAAGGTTCTGCAATCCAGGCAGCTTGGACAAGAATTTGGTGCAAGGAAAAATTGTGCATTGTGATCATGGAAATGC TGAGGGAGCTGGCATTGTGGAGTACATCCATTCAACTAGTAACCCAACTGCTGTAATATTCAAGACCGATGCCGTCCCCGATAATTCATCCCCTTTCGTG GCCATCTTCTCTTCAAGGGGACCTAACCCTATAACCAGGGACATTCTTAAGCCGGACCTTACAGCACCTGGAGTTGATATCCTAGCAGCATGGTCTGAAG CTACAACCGTATCAGGCGATGAAGGAGATACAAGAGTTGTCCCATTTAACATCATCTCTGGTACTTCCATGTCTTGTCCTCATGCTACTGCAGCAGCAGC TTATGTTAAATCATTCCATCCTACTTGGTCACCAGCTGCTATCAAGTCCGCTCTCATGACTACAGCTCATTCGGTAAATGTGAAAGACATTAATTTCGAC TCCGAGTTTGGATACGGATCAGGCCAAATCAACCCCATCACGGCTGCAGATCCTGGAGTAGTATACGATGCTGGTGAGATTGATTATGTTAAAATGCTGT GTGGCCAAGGATACAACGCTACACAACTTCGCCTGGTTACAGGAGATCCAAGTGCTTGTTCTGTATCCACAAATGAAACAGTGTGGGACCTAAACTACCC GTCGTTCGCTCTATCATCAGAGAAGCCCAAGAAATCCATTACTCGTGTGTTTCACAGGACAGTTACGAACGTTGGATCAGCAGTGTCAACATACAAAGCT TTGGTACGTGCTCCTAGAGGGCTTAGGGTCCGGGTTGAACCAAATGTTCTTACTTTCAAGAACACTCTGGAGAATCAATCATTTGTCGTTACGGTCACTG CTAAGCTGGGAGGCAGCTTGTTATCTGGCTCTTTGGTTTGGGATGATGGGATTCATTCCGTAAGGAGTCCTATTGTTGCTTTTGTGGCTCCTCAAGAAGA TAGCTGA
AA sequence Show only first row Show all	>Lus10009868 pacid=23180157 polypeptide=Lus10009868 locus=Lus10009868.g ID=Lus10009868.BGIv1.0 annot-version=v1.0 MGYRSNTDTPASALHVSILRQLTGSVSVASESLVYSYTKSFNGFAAWLTLTQLAKLSGYEGVVSVFPSQRRQLHTTRSWDFLGFPQNVSRTTMESDIIVG MLDTGIWPESPSFNDSGYGLPPKKWKGTCQSSSNFTCNNKIIGARFYHAGRNFSEEEFPSPRDSEGHGSHTASTAAGNLVTSASLLGLASGTARGGVPSA RIAVYKICWSDGCFDADILAAFDDAIADGVDIISLSVGGAPTDYFKDAIAIGAFHSMKKGILTSNSAGNSGPEPGSISNCSPWSLSVAASTIDRQFLTTV QLGNGQNYKGLSINTFQPSSSYPLIYAGDAPNRTSGQNLSDSRFCNPGSLDKNLVQGKIVHCDHGNAEGAGIVEYIHSTSNPTAVIFKTDAVPDNSSPFV AIFSSRGPNPITRDILKPDLTAPGVDILAAWSEATTVSGDEGDTRVVPFNIISGTSMSCPHATAAAAYVKSFHPTWSPAAIKSALMTTAHSVNVKDINFD SEFGYGSGQINPITAADPGVVYDAGEIDYVKMLCGQGYNATQLRLVTGDPSACSVSTNETVWDLNYPSFALSSEKPKKSITRVFHRTVTNVGSAVSTYKA LVRAPRGLRVRVEPNVLTFKNTLENQSFVVTVTAKLGGSLLSGSLVWDDGIHSVRSPIVAFVAPQEDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03620			Subtilisin-like serine endopep...		Lus10009868 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10011198 [exp]	14.5	0.6946
AT3G27390			unknown protein		Lus10022317 [exp]	26.5	0.7632
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	28.6	0.7647
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	28.9	0.7706
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	46.0	0.7407
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	46.1	0.7586
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	46.5	0.7570
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	48.3	0.7131
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	53.5	0.7587
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10038546 [exp]	57.9	0.7306

Compare expression of checked genes

Lus10009868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.