Plant FIBer expression Database

Lus10009870 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10009870 pacid=23180187 polypeptide=Lus10009870 locus=Lus10009870.g ID=Lus10009870.BGIv1.0 annot-version=v1.0
ATGGAAAGCAATAGGAAGGTGGTTGGTGGTGGATCGTCGTCTTATTCTTCAACCGCATCTGGGTCAACGTTGGATCATCTCTTTGGTCCAAAGGAAACCT
CCTCTGCCTCTAATTCCTCTTCCAGTAGCAGCAGCTACTTTGGGTCAATCTTCTCCTCTAATTCTTCGGTGGAGCCCCGTAATGGAGGTCATGTCAAAGA
CGGCAACGGAACGGCGTCAGCAGCAGCAGCAGCAGCCTCGCCGTCCTGCTACTTGAGCTCATCAATCTACTACGGTGCACAAGAACATTACTCTCCTACT
AACAACAACAACAACAACCCTGCAGCCCCTCATCACCACACTTACAAGAAAGACGGCGGTGATGACGACGGCCAAAATGGCAATAACTCCAACTCTGCTT
CCAGAGGCAACTGGTGGCAAGCTGGGAAATGA
AA sequence
>Lus10009870 pacid=23180187 polypeptide=Lus10009870 locus=Lus10009870.g ID=Lus10009870.BGIv1.0 annot-version=v1.0
MESNRKVVGGGSSSYSSTASGSTLDHLFGPKETSSASNSSSSSSSYFGSIFSSNSSVEPRNGGHVKDGNGTASAAAAAASPSCYLSSSIYYGAQEHYSPT
NNNNNNPAAPHHHTYKKDGGDDDGQNGNNSNSASRGNWWQAGK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G39855 unknown protein Lus10009870
[exp]
0 1
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Lus10031770
[exp]
1.0 0.9585
AT2G23440 unknown protein Lus10009345
[exp]
2.4 0.8131
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Lus10031192
[exp]
3.9 0.8364
AT5G26620 unknown protein Lus10001512
[exp]
10.2 0.8274
AT2G46200 unknown protein Lus10021211
[exp]
14.9 0.8371
AT5G37730 unknown protein Lus10017628
[exp]
20.6 0.7632
AT5G28010 Polyketide cyclase/dehydrase a... Lus10039863
[exp]
25.6 0.8187
AT5G22860 Serine carboxypeptidase S28 fa... Lus10021400
[exp]
26.8 0.6072
AT1G64870 unknown protein Lus10009296
[exp]
29.8 0.6978
AT2G16630 Pollen Ole e 1 allergen and ex... Lus10026279
[exp]
34.0 0.8114

Lus10009870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.