Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 229 / 2e-70 Plant protein of unknown function (DUF247) (.1) AT3G50120 221 / 3e-66 Plant protein of unknown function (DUF247) (.1) AT4G31980 223 / 8e-66 unknown protein AT3G50170 218 / 3e-65 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22540 208 / 3e-62 Plant protein of unknown function (DUF247) (.1) AT3G50150 209 / 5e-62 Plant protein of unknown function (DUF247) (.1) AT3G50130 208 / 3e-61 Plant protein of unknown function (DUF247) (.1) AT3G50160 204 / 2e-60 Plant protein of unknown function (DUF247) (.1) AT3G50140 204 / 8e-60 Plant protein of unknown function (DUF247) (.1) AT3G47250 192 / 5e-56 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011501 [exp] 221 / 2e-66 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 216 / 4e-65 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 211 / 4e-63 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 208 / 2e-62 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 204 / 2e-60 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 196 / 1e-57 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 196 / 2e-57 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 195 / 5e-57 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 194 / 6e-57 AT4G31980 251 / 5e-76 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181600 [exp] 290 / 2e-94 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 273 / 2e-87 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 273 / 2e-87 AT4G31980 232 / 3e-69 unknown protein Potri.004G187100 [exp] 228 / 1e-69 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 224 / 2e-67 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 222 / 2e-67 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 216 / 3e-65 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 211 / 1e-63 AT4G31980 217 / 1e-63 unknown protein Potri.010G144200 [exp] 211 / 1e-63 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 213 / 2e-63 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10009871 pacid=23180145 polypeptide=Lus10009871 locus=Lus10009871.g ID=Lus10009871.BGIv1.0 annot-version=v1.0 ATGGGAAGCGAAGCAGATGGTTATGTTGTCTCTATCCGGATTACGGAAAAGCTTAAGAAGTCATCCCCTTTTTCCTCTGAGTTCAGCATTTTCAAGGTTC ATGATCAACTAAGGAATGTAAACAAGGAGGCGTATGAGCCACAGATGCTCGCAATTGGTCCTTACCATCACGGTAAGGCTCACTTGCAACAGATGGAGGA CCACAAAACACACTACCTAAGACTGCTACTTCAAAGAAGAAATGAAGAGTTCTATAGCGAAGTGAAGAGATACGCCTCAGCCATGAAAGTATTAGAAGAA AGGACTCGTAGATGTTATGCAGATTCCATACCTCTTGACTCCGACGAATTCGTTGAGATGGTGGTCCTCGATGGCTGTTTCCTCGTCGAGCTGATACGAA AGTGTTGTACAATGACAGAGTTGTTGGACGATGATGACCCCATCTTCTTCGTCCCTTCGAATTTCAACGGGATAATGCGTGATGTCCTATTGCTGGAGAA TCAGCTCCCAATGTTTGTACTCTCGAAACTGTTTGAGCTCACCAGGCTGCAGAACGAATCAAGGGACGAATTCATCTTCAAGGTGGGTCATTTCTTCAAG TGGAAACGTATGGGGCTCGGTTACATTGACATTGACGATGAAGGGTTTTGGTCAGAACACAAGCACATGTTAAGCCTTGTGCATGACAGTTGGATTCCCC CACATGGGAGAAGGATCCCAAACGAGAATCAAAGAACCAAACAGCCAAAACAGTGCAAACGCATCATCTGTGCAACAAAGCTAAGAGAAGCAGGAATCAA CCTAAGACACGTTGAGCAAAGTGAAGGACATCGTCATACCTTGCTGGATGTGAAATTCGAACGCGGCTCATTGTTCATCCCAACAATGACGATCGAAGAT GACACAGAGTCGTTGTTGAGGAATTTGATAGCGTACGAGCAGCTGCGACCCAAGAACCAAGCCAGCTACCTATGCTACTACATGACGCTGATGGATTGTC TGATCGACACGAGAGCAGACGTGGAGTTGCTCTGTCGGTGTGGGATCATAAGCAACCACATCGGAGACGATGAGAAGGTCGCCGCTTTGTTCAAGAAGCT CGGAGATCACGTCCTTGTTCATCATTCGCACTCCTGTTACAGCGATGTGTTCGAGCAAGTAAACAAGCACTGTGGCAAGAAATGGTACCGATGGATGGCG AAGCTGCGACACGATTACTTCGGAAGCCCCTGGGCGGTTCTTTCGTTCTTTCCTGCGTTTGTTCTGCTCCTGCTTGCCTTCGTTCAGGCTTTGTACTCTG CTTTGGCCTACTACAAGTGA
AA sequence Show only first row Show all	>Lus10009871 pacid=23180145 polypeptide=Lus10009871 locus=Lus10009871.g ID=Lus10009871.BGIv1.0 annot-version=v1.0 MGSEADGYVVSIRITEKLKKSSPFSSEFSIFKVHDQLRNVNKEAYEPQMLAIGPYHHGKAHLQQMEDHKTHYLRLLLQRRNEEFYSEVKRYASAMKVLEE RTRRCYADSIPLDSDEFVEMVVLDGCFLVELIRKCCTMTELLDDDDPIFFVPSNFNGIMRDVLLLENQLPMFVLSKLFELTRLQNESRDEFIFKVGHFFK WKRMGLGYIDIDDEGFWSEHKHMLSLVHDSWIPPHGRRIPNENQRTKQPKQCKRIICATKLREAGINLRHVEQSEGHRHTLLDVKFERGSLFIPTMTIED DTESLLRNLIAYEQLRPKNQASYLCYYMTLMDCLIDTRADVELLCRCGIISNHIGDDEKVAALFKKLGDHVLVHHSHSCYSDVFEQVNKHCGKKWYRWMA KLRHDYFGSPWAVLSFFPAFVLLLLAFVQALYSALAYYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	0	1
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	1.4	0.8827
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	2.2	0.8689
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	2.8	0.8872
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	3.2	0.8576
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	3.5	0.8733
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	4.5	0.8271
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	5.2	0.8583
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	5.7	0.8798
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	7.4	0.8519
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	10.4	0.8642

Compare expression of checked genes

Lus10009871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.