Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05940 619 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT5G02010 564 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT3G55660 511 / 3e-176 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G38430 454 / 1e-154 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 431 / 8e-147 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 412 / 5e-139 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 389 / 3e-130 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT3G24620 367 / 4e-121 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 362 / 5e-119 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G52240 355 / 3e-115 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000399 [exp] 991 / 0 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 725 / 0 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 707 / 0 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 581 / 0 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 580 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 442 / 5e-149 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 439 / 3e-148 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 418 / 1e-140 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 413 / 1e-138 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196000 [exp] 761 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.008G062000 [exp] 759 / 0 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 622 / 0 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.006G092600 [exp] 620 / 0 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.009G140100 [exp] 475 / 2e-162 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 461 / 4e-157 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 446 / 1e-152 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 444 / 2e-151 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 436 / 1e-147 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 421 / 2e-141 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10009874 pacid=23180150 polypeptide=Lus10009874 locus=Lus10009874.g ID=Lus10009874.BGIv1.0 annot-version=v1.0 ATGAATACTGTGGGGAAGAAGGGTAGTGGAGGAATTGAGAAAACGAGGAATGGATGGGAGTCACCGATGAGCAGTAGCAGCGGTGGGGAAATGAGCTCCA AGACTGAGAGGAGGAGAAGCAGTGTTGGTTGTGATTCTCATTCGTCTCCTTCTAAGTCTCCTCTGGGTTGGCCGATAAAGAAGGCTGGAGAGAGGAAGAG TTTGTTGGCATCTGCTGGTGGTGGGTATGGTTATGGAGGAGGAGATGAAGAGAATGGTAGTCTGTTGAAGGATTCCAAGTTATACAAGCTCAACCCCCGG AATTCTGAGACTGATTTGATGAAAGAGAGGTTTGCAAAATTGTTGCTTGGAGAAGACATGTCAGGTTCTGGAAAAGGGGTTTGCACAGCCCTCGCTATCT CCAATGCCATAACCAATCTCAGTGCTACTGTGTTTGGTCAACTGTGGAGGCTTGAACCACTACCTCCACAGAAGAAATCACTGTGGAGAAGAGAGATCGA ATGTCTACTTTCTGTCGGCGATCACATAGTGGAGCTAATTCCCTCATGGCAAACGTACGCTGACGGAAGTAAGCATGAGGTCATGACTTGCAGGGCTAGA TCGGACCTTTTTATCAATCTCCCAGCTCTGCGGAAGCTTGATAACATGCTTCTTCAAGTATTGGATAATTTCGTGGATACGGACTTCTGGTATGTTGATC AAGGGATTGTAGCTTCAGATGCAGCAGATGGCTCAGCTTCCTTCCGAAGAACGATTCAGCGGGAAGAGGAGAAGTGGTGGCTACCAGTACCCCGTGTCCC CGCTGGTGGTCTTAGTGACGATTCAAGAAAACAGTTGAACCACACTCGTGAAAGCACCAGCCAGATACTCAAAGCTGCTATGGCAATCAACAGCGTTGTT TTAGCTGACATGGATGTTCCTGACTCCTACTTAGACACTCTTCCCAAGAATGGGAGAGCTTGTCTGGGAGACTTGCTATATCGGTATATTACTTCAGATC AGTTCTCAGCAGACTGCCTACTCGATTGCCTTAACATTTCTGCAGAGCATGTTGCTCTAGACATTGCAAATCGTATCGAGTCTGCAATCTATGTGTGGCA GCGGAGGGCTCATCCGAAACCGACAACAACCCAAAACCGGACCAGTACAAAGTCATCATGGGAGATGGTGAAGGAGTTGATGATGGATGGAGACAAGATG GAAATGCTTGCGGAAAGAGCGGAAAGCCTCCTGCTTTCCTTGAAGCAACGGTTTCCCAATCTAACCCAGACTACATTAGACACCAGCAAAATCCAGTTCA ACAAGGATGTGGGGAAGTCCATCCTCGAGAGCTATGCAAGAGTTCTGGAGAGCTTGGCATTCAACATCGTTGCACGCATCGATGATCTGCTGTATGTGGA TGATCTGACGAAATGTTCAGACAAACTATCTGTGATTGGACACAAGAAGGTCTCATACCCAGGCACTCCCTATAGAACAACGTTCAGCACACCAAGCCGT TCACCTCTTCCTCTTGTTAGTCCTGCAAGGGGTGAGAGAACTCCATTTGTCAATACCACCAACACCACTGTCGACACTGCCGCCAACAGTCGAAATAATC ATCATCGCCGTGGGTTCGGAGTGAAGAAGGCGTTAACAAATTATCTCGGTGCTGACGCAAAATCAAAAGTCTGCGGCAACCCAACTGATGATGCAAACCA GAATGAGAACAAGTCACAGTAG
AA sequence Show only first row Show all	>Lus10009874 pacid=23180150 polypeptide=Lus10009874 locus=Lus10009874.g ID=Lus10009874.BGIv1.0 annot-version=v1.0 MNTVGKKGSGGIEKTRNGWESPMSSSSGGEMSSKTERRRSSVGCDSHSSPSKSPLGWPIKKAGERKSLLASAGGGYGYGGGDEENGSLLKDSKLYKLNPR NSETDLMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLSATVFGQLWRLEPLPPQKKSLWRREIECLLSVGDHIVELIPSWQTYADGSKHEVMTCRAR SDLFINLPALRKLDNMLLQVLDNFVDTDFWYVDQGIVASDAADGSASFRRTIQREEEKWWLPVPRVPAGGLSDDSRKQLNHTRESTSQILKAAMAINSVV LADMDVPDSYLDTLPKNGRACLGDLLYRYITSDQFSADCLLDCLNISAEHVALDIANRIESAIYVWQRRAHPKPTTTQNRTSTKSSWEMVKELMMDGDKM EMLAERAESLLLSLKQRFPNLTQTTLDTSKIQFNKDVGKSILESYARVLESLAFNIVARIDDLLYVDDLTKCSDKLSVIGHKKVSYPGTPYRTTFSTPSR SPLPLVSPARGERTPFVNTTNTTVDTAANSRNNHHRRGFGVKKALTNYLGADAKSKVCGNPTDDANQNENKSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	0	1
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	2.2	0.9041
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	3.5	0.9194
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	3.5	0.9027
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	3.9	0.9042
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	4.4	0.8705
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10016275 [exp]	4.5	0.9063
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	4.5	0.9041
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	8.1	0.8879
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	11.6	0.8963
AT2G39870			unknown protein		Lus10040247 [exp]	12.0	0.8980

Compare expression of checked genes

Lus10009874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.