Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05930 318 / 6e-110 ATGC1 ARABIDOPSIS GUANYLYL CYCLASE 1, guanylyl cyclase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062100 [exp] 363 / 2e-127 AT5G05930 323 / 1e-111 ARABIDOPSIS GUANYLYL CYCLASE 1, guanylyl cyclase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF09778 [flax] [poplar] Guanylate_cyc_2 Guanylylate cyclase
Representative CDS sequence Show only first row Show all	>Lus10009875 pacid=23180127 polypeptide=Lus10009875 locus=Lus10009875.g ID=Lus10009875.BGIv1.0 annot-version=v1.0 ATGTGGCCCTTGTATTTTCTGGGCAAGATACTTAACGTCGAAGCTGATGAAGACGAATCTCAGGTTATCGATCGTTTATTTGGGAAATGGCAGGACACAG CCGTTTCCGTATCACACTTCGTTGAAGTTCCTCACGTAAACCAGCTCCACTCTTGGGATTGTGGTCTGGCATGTATTGTAATGGCTTTGAATACTCTTGG CATTGGTGATTGCAGCATTCAATCCTTGGAACATATGTGTGACACAAAGAGCATCTGGACTGTTGATTTAGCCTTTCTGCTCAAGAGGTTTTCAATAAGA TTTTCATACTTCACTGTGACCATTGGAGCAAATCCCAATTTCTCTGTTGAGAAATATTATAAGGAACAGCTGCCTACTGATGTTGTACGGGTAGATATGC TATTTGAAAAAGCACCAGAAGAAGGGATCAAAATACAGTGCAGGTCAATCAATGAAAGAGAGATTTCCTGCTTGATTTTATCAGGGAAATACATCGTCAT TGCTTTGGTTAATCAGTACAAATTGAGTCGCATATGGCTGGAGGATGCTATCCTATCAAGTTTGGAAGATAGCAACGCTGAATATGTAGGTCATTACATA GTGATATGTGGCTACGATTCCGGTAGCGATGAGTTTGAAATACGAGATCCAGCTAGCTCCAGGAAGCATGAGAGGATTTCGTCCAAATGCTTAGAAGAAG CACGCAAGTCCTTTGGCACTGATGAAGATCTTCTTCTGATATCTCTGGAGAATAGCAACAAACCGAGCAAGTGTTCGTGGGTGCAACTTCGTCCACTGGC CAGCACATCATTTCATTAG
AA sequence Show only first row Show all	>Lus10009875 pacid=23180127 polypeptide=Lus10009875 locus=Lus10009875.g ID=Lus10009875.BGIv1.0 annot-version=v1.0 MWPLYFLGKILNVEADEDESQVIDRLFGKWQDTAVSVSHFVEVPHVNQLHSWDCGLACIVMALNTLGIGDCSIQSLEHMCDTKSIWTVDLAFLLKRFSIR FSYFTVTIGANPNFSVEKYYKEQLPTDVVRVDMLFEKAPEEGIKIQCRSINEREISCLILSGKYIVIALVNQYKLSRIWLEDAILSSLEDSNAEYVGHYI VICGYDSGSDEFEIRDPASSRKHERISSKCLEEARKSFGTDEDLLLISLENSNKPSKCSWVQLRPLASTSFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	1.4	0.8771
AT4G24015			RING/U-box superfamily protein...		Lus10023055 [exp]	3.2	0.7702
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	3.9	0.8193
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	5.1	0.8498
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028854 [exp]	6.0	0.7732
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	6.5	0.7646
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	7.0	0.7607
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	20.6	0.7493
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	21.9	0.7060
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	22.9	0.7263

Compare expression of checked genes

Lus10009875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.