Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78270 284 / 2e-90 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 283 / 6e-90 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 273 / 3e-86 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 270 / 8e-85 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 265 / 5e-83 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 264 / 6e-83 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G46660 218 / 2e-65 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G11340 216 / 5e-65 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT2G26480 213 / 2e-63 UGT76D1 UDP-glucosyl transferase 76D1 (.1) AT3G46670 211 / 6e-63 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014831 [exp] 899 / 0 AT1G22380 296 / 5e-95 UDP-glucosyl transferase 85A3 (.1) Lus10004670 [exp] 478 / 4e-166 AT1G22340 313 / 1e-101 UDP-glucosyl transferase 85A7 (.1) Lus10017201 [exp] 359 / 2e-119 AT1G22380 337 / 4e-111 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 304 / 6e-98 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 288 / 3e-92 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013924 [exp] 287 / 2e-91 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 280 / 9e-89 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010665 [exp] 276 / 2e-87 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 276 / 3e-87 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G062400 [exp] 556 / 0 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 405 / 1e-137 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.016G105300 [exp] 404 / 3e-137 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.002G098400 [exp] 313 / 1e-101 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 290 / 1e-92 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 288 / 6e-92 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 287 / 1e-91 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G021500 [exp] 286 / 3e-91 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 286 / 3e-91 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 283 / 3e-90 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10009876 pacid=23180162 polypeptide=Lus10009876 locus=Lus10009876.g ID=Lus10009876.BGIv1.0 annot-version=v1.0 ATGGAACATTCCGGTCGACCACCGCCTCACGTTTTAATATTTCCTTACCCGTTGCAAGGCCACGTCACCTCCATGCTAAACTTAGCAGAGCTGCTCTGTC TCTCCAACATCAGAGTCACCTTCTTCAACTCCGACCACATCCAGCGCCGCCTCCTCCAGTTCACCTCCGTCCAATCCCGTTTCGCCAAATACCCTTATCT CTTCCACTTCCAAACCATTTCCGACGGCCTGCCGTCCGACCACTCCCGCAGCGGCAAAGACGTCTTGGACCTCTTTCTGTCGATGAGCACCATAACCAGG CCCCTTTTCAAGGAGCTGCTTCTCTCAAATCAACCTCCCATTGACTGTGTAATTAGCGACGGAGGTCTAGAGTTCACCGTGGAAGTCGCCGATGAGGTCG GTATTCCGTTGGTTTATTTCCGAACAATTGGAGCGAGCTGTTTCTGGATTTATTTCTGCATTCCTGACATGATTGAAGCCGGGGAGCTTCCGATTCGAGT TGAAGTAGAAGAAGAGGATATGGAGAGGGTGATAACTAAAGTGCCAGGAGCAGAGGGGGTTCTGAGGTGCAGAGATCTTCCGAGCTTGTGCCGCGTGGGA GACCTCTCGGATCCGTTCCTTCAAGCTATAGTATTAACTACCAGGAAGTCCCCAAAAGTTTACGCCCTTATACTCAACACCTTCGAGGACTTGGAAGGTC CAATACTCGGCAGAATCAGAACTCGTTGCCCGAAAACTTACCCGATCGGACCCATCCACGAGCAGTTAAGATTAAAGCTTGTCAACCTCAAAACTCCTCA AGAATCATCATCATCATCATCGTCAAGTCTGTGGGAAGAAGACAGAAGCTGTATGAAGTGGCTAGACTTGCAGCCACCCAAATCTGTGCTCTATGCGAAC TTCGGCAGCATAACGGTGATGAAGCCAGAGGAACTGGTGGAAATCTGGCACGGTCTCATCAACAGCAAACAAAAGTTCTTGTGGGTGATAAGACAAGGCA CAATCACTAGCATTGAGAATACTAGCGAATTCCCAGAGGAGCTTGTTAAAGGGGGTAGTAAGGGAGATGAGTTCATGGTGTTGTCAGGATGGGTGGCGCA GAAGGAAGTGCTGGATCATGAATCAATTGGTGGGTTTCTGACGCACAGTGGGTGGAACTCGACGTTGGAGACGATAGTGGCTGGAGTGCCGATGATTTGT TTGCCTTATTTCGCTGACCAGCAAGTGAACAGCAGGTTTACGAGCGAGGTGTGGAAGCTGGGGCTGGACATGAAGGATTCGTGCAAGAGAGGTGTGGTGG AGAGGATGGTGAATGAACTAATGGTGGAGAGGAAGGAAGAGTTTGGGAGATGTGCTGCTAAGATGGCCGAGTTGGCCAGAATGAGTGTGAGTACGGGTGG ATGTTCTAGCCGGAATCTGGAGGATTTGATTGAGGAAATCAGGTCAATGAGGTCTAGCTAG
AA sequence Show only first row Show all	>Lus10009876 pacid=23180162 polypeptide=Lus10009876 locus=Lus10009876.g ID=Lus10009876.BGIv1.0 annot-version=v1.0 MEHSGRPPPHVLIFPYPLQGHVTSMLNLAELLCLSNIRVTFFNSDHIQRRLLQFTSVQSRFAKYPYLFHFQTISDGLPSDHSRSGKDVLDLFLSMSTITR PLFKELLLSNQPPIDCVISDGGLEFTVEVADEVGIPLVYFRTIGASCFWIYFCIPDMIEAGELPIRVEVEEEDMERVITKVPGAEGVLRCRDLPSLCRVG DLSDPFLQAIVLTTRKSPKVYALILNTFEDLEGPILGRIRTRCPKTYPIGPIHEQLRLKLVNLKTPQESSSSSSSSLWEEDRSCMKWLDLQPPKSVLYAN FGSITVMKPEELVEIWHGLINSKQKFLWVIRQGTITSIENTSEFPEELVKGGSKGDEFMVLSGWVAQKEVLDHESIGGFLTHSGWNSTLETIVAGVPMIC LPYFADQQVNSRFTSEVWKLGLDMKDSCKRGVVERMVNELMVERKEEFGRCAAKMAELARMSVSTGGCSSRNLEDLIEEIRSMRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	0	1
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	2.0	0.8781
AT3G62950			Thioredoxin superfamily protei...		Lus10005938 [exp]	5.0	0.7771
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	6.2	0.8350
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10015361 [exp]	8.9	0.7238
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	9.9	0.7654
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	11.2	0.8329
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	12.2	0.8250
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	13.8	0.8238
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	17.3	0.8094
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	18.1	0.8145

Compare expression of checked genes

Lus10009876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.