Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77680 318 / 1e-99 Ribonuclease II/R family protein (.1) AT2G17510 77 / 6e-15 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014833 [exp] 613 / 0 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10025614 [exp] 588 / 0 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 509 / 3e-173 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10029500 [exp] 66 / 3e-11 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086400 [exp] 367 / 2e-117 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.005G174800 [exp] 271 / 3e-82 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.007G059100 [exp] 76 / 2e-14 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.001G137401 [exp] 47 / 4e-06 AT1G77680 63 / 5e-12 Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10009879 pacid=23180177 polypeptide=Lus10009879 locus=Lus10009879.g ID=Lus10009879.BGIv1.0 annot-version=v1.0 ATGTGCCAGGTGATGTTAGTGGATCATCCCTTTCGATGTCATGGCCAGACCCAAGTTCATGATGAAGGCATTTGTTCAAATGGTGGTTTGTGTATGGTGC AACCCCGATTTGAAAGCCACCCACAAGAGAAAATATACAATTCGTACTGGTCAATGGAGGCCGTTAACGAGGCTTTGGAGAGAGGTGATACGTTCAAATC CTTGTTTCGGGCATACTGCAAAGTTGATGGAGTTCCAACAGATATCCTCATAAGTGGATATCCTGCACCGAACCGCGCTGTAGAAGGTGATACTGTCGTC ATCAAGATTGATCCTTTGTATTCATGGGCCAGGATGAAAGGGTCAAATGGACCCACTAACAGATTTGAGCTGGTTGAAGAATCTAAAATACATGGCAGTG AGGCAGTTGATGCAAGTGGAAAGGAAAACGGAGTTGAGATGTCTACAATGCAAGGTGAGAATGCACTGGAGAAATTATGTACATTCATGAGTTTCTATCC ATCAAAACGTTCTACTGGGAAAGTTGTAGCAATCATTGAGAAGTCTCCTCTGCGAGATGGTATTGTGGGTTTCCTCAATGCCAAGCAGTGGTTTTATTAT AGGGAAGGATTTGGAAAGGACCCTAGAAGGAATACAAATCCGTCTTTACCCATATGGGACGACGAGTACATCCAAGTGACTCCTACCGACCCAAAGTTCC CAAAATTGTCTGTCCGTGTGGGGAGTTTACCTAGTTGCATCAAGAAGAGATTGGAAGAGGGAGATAAAACACTGGACTTTGACTTAGTGGCTGCACATAT CGAAAATTGGACTGAAGAAAGCCCTTCTCCACAAGCATGCATTACTCGTATTTTTGGTCGTGGAAGTGAAATGCAGCCTCAGATTAATGCAATATTATAC GAGAATGCAATTTGCGTGTCTGACTTTTCTCCGGAGTCACTTTTGTGCCTTCCTGGGAAGACATGGGAAATACCAGAAGAGGAAATCCGCATCAGAAGGG ACCTTAGGCATTTGTGCACTTTTACAATTGATCCTTCGACTGCCACTGATTTAGATGACGCTCTATCAGTTGAAAGTTTAGGTGATGATAGTGTTAGAGT AGGGGGCCACATTCATTCTCAATTTTCTGGGACTTCAATAGTAATGGGGATATGA
AA sequence Show only first row Show all	>Lus10009879 pacid=23180177 polypeptide=Lus10009879 locus=Lus10009879.g ID=Lus10009879.BGIv1.0 annot-version=v1.0 MCQVMLVDHPFRCHGQTQVHDEGICSNGGLCMVQPRFESHPQEKIYNSYWSMEAVNEALERGDTFKSLFRAYCKVDGVPTDILISGYPAPNRAVEGDTVV IKIDPLYSWARMKGSNGPTNRFELVEESKIHGSEAVDASGKENGVEMSTMQGENALEKLCTFMSFYPSKRSTGKVVAIIEKSPLRDGIVGFLNAKQWFYY REGFGKDPRRNTNPSLPIWDDEYIQVTPTDPKFPKLSVRVGSLPSCIKKRLEEGDKTLDFDLVAAHIENWTEESPSPQACITRIFGRGSEMQPQINAILY ENAICVSDFSPESLLCLPGKTWEIPEEEIRIRRDLRHLCTFTIDPSTATDLDDALSVESLGDDSVRVGGHIHSQFSGTSIVMGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77680			Ribonuclease II/R family prote...		Lus10009879 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	4.0	0.7311
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	18.2	0.6662
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	18.4	0.6939
AT5G58100			unknown protein		Lus10008552 [exp]	19.2	0.7090
AT3G46220			unknown protein		Lus10004920 [exp]	23.9	0.6994
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	25.7	0.6973
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	30.2	0.6697
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	32.0	0.6295
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	41.3	0.6651
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	64.0	0.6275

Compare expression of checked genes

Lus10009879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.